Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 7.7e-109 397.1 196 100.0
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 2.2e-103 379.0 200 94.5
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.6e-67 258.1 206 64.1
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 5.8e-64 248.1 227 59.0
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 5.8e-64 248.1 231 56.7
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 5.8e-64 248.1 187 64.7
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.3e-63 246.9 230 58.3
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.7e-63 245.4 227 57.3
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 8.3e-63 244.2 202 60.4
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.9e-62 243.0 229 58.1
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.9e-62 243.0 231 55.8
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 2.4e-62 242.7 227 58.1
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.4e-62 242.7 143 78.3
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 4.1e-62 241.9 227 58.1
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 7.1e-62 241.1 227 57.3
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 9.2e-62 240.7 227 54.6
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.6e-61 240.0 176 64.8
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.1e-61 239.6 227 56.8
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 3.5e-61 238.8 210 58.6
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 3.5e-61 238.8 230 58.7
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 6.0e-61 238.0 232 56.5
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.7e-60 236.5 227 55.5
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.3e-60 236.1 227 55.5
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.9e-60 235.3 227 55.1
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.9e-60 235.3 197 58.9
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 8.6e-60 234.2 227 56.8
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 8.6e-60 234.2 227 56.4
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.1e-59 233.8 227 56.4
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.1e-59 233.8 227 57.3
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 2.5e-59 232.6 193 59.1
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 2.5e-59 232.6 150 70.7
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.3e-59 232.3 193 60.6
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 4.3e-59 231.9 227 53.7
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 4.3e-59 231.9 210 56.7
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 7.3e-59 231.1 188 61.2
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 9.5e-59 230.7 227 56.4
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.2e-58 230.3 221 54.8
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 2.1e-58 229.6 227 54.6
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.8e-58 229.2 227 54.2
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 3.6e-58 228.8 187 61.0
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 4.7e-58 228.4 227 55.1
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 6.2e-58 228.0 228 55.7
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 6.2e-58 228.0 218 55.0
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 8.1e-58 227.6 224 55.4
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.1e-57 227.3 237 56.1
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.4e-57 226.9 188 60.6
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 1.8e-57 226.5 218 57.8
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 1.8e-57 226.5 176 63.6
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 3.1e-57 225.7 231 55.4
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.2e-56 223.8 232 54.3
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.5e-56 223.4 227 54.6
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.5e-56 223.4 202 56.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 3.4e-56 222.2 218 54.6
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 4.4e-56 221.9 232 54.7
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 5.8e-56 221.5 223 56.1
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 7.6e-56 221.1 228 53.1
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 7.6e-56 221.1 234 53.4
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 9.9e-56 220.7 177 62.7
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 1.7e-55 219.9 224 54.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.2e-55 219.5 233 48.1
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.9e-55 219.2 209 57.4
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.1e-54 217.2 228 53.5
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.4e-54 216.1 172 62.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 2.4e-54 216.1 202 53.5
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.2e-54 215.7 202 54.0
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 4.2e-54 215.3 229 54.6
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 9.2e-54 214.2 222 55.4
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 9.2e-54 214.2 202 53.5
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 3.5e-53 212.2 198 56.6
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.5e-53 212.2 179 60.3
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 6.0e-53 211.5 197 56.3
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 6.0e-53 211.5 180 56.7
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.9e-51 206.5 193 53.4
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 4.3e-51 205.3 181 54.7
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 5.6e-51 204.9 189 57.7
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.2e-50 203.8 212 54.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 2.1e-50 203.0 186 57.5
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.6e-50 202.2 168 60.1
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.6e-50 202.2 168 60.1
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 6.2e-50 201.4 188 56.9
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 8.1e-50 201.1 175 56.6
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.1e-49 200.7 180 58.3
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.1e-49 200.7 185 57.8
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 1.4e-49 200.3 227 51.5
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 3.1e-49 199.1 228 52.6
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 5.3e-49 198.4 229 51.5
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.5e-48 196.8 227 52.4
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 3.4e-48 195.7 227 52.4
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 4.4e-48 195.3 214 54.7
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 4.4e-48 195.3 227 52.0
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 7.6e-48 194.5 153 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.3e-47 193.7 171 55.0
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.2e-47 193.0 173 54.3
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.9e-47 192.6 157 60.5
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.9e-47 192.6 226 51.8
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.9e-46 189.9 193 55.4
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 9.3e-46 187.6 161 57.8
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-45 186.8 153 60.8
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.7e-45 186.0 155 60.6
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 4.6e-45 185.3 187 50.3
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.8e-45 184.5 218 48.6
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.7e-44 183.3 235 46.4
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.3e-42 177.2 152 54.6
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 9.9e-40 167.5 190 51.6
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.1e-38 164.1 215 48.4
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.0e-36 157.5 184 45.1
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 3.9e-36 155.6 255 42.4
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 3.7e-34 149.1 140 57.1
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 6.2e-34 148.3 138 55.1
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.8e-32 141.7 97 64.9
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 7.6e-32 141.4 227 40.5
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.2e-30 135.6 111 61.3
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 5.6e-27 125.2 116 56.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 7.4e-27 124.8 112 58.0
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 9.0e-25 117.9 106 54.7
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.2e-22 109.4 115 53.0
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 7.1e-22 108.2 175 36.6
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.0e-20 104.4 113 50.4
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 3.9e-20 102.4 111 48.6
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.7e-20 101.3 95 52.6
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 2.8e-18 96.3 97 51.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.1e-17 94.4 53 79.2
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.8e-17 93.6 53 77.4
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.8e-17 93.6 55 72.7
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.6e-16 89.7 50 78.0
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.9e-15 86.3 77 54.5
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 7.9e-13 78.2 59 62.7
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.0e-12 76.3 55 63.6
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.2e-10 70.1 39 76.9
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 3.7e-10 69.3 88 45.5


User provided reference genes

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