Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 4894.3 2540 100.0
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 4756.0 2541 97.2
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3663.2 2558 74.6
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3651.7 2598 73.9
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3597.4 2558 72.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3509.9 2557 72.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3419.4 2559 70.6
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3387.4 2557 69.9
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3373.9 2571 69.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3373.2 2567 70.1
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3358.9 2566 69.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3353.1 2568 68.5
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3337.0 2561 68.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3327.3 2558 68.1
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3327.3 2563 68.5
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3322.7 2566 68.4
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3317.3 2587 68.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3316.6 2566 68.3
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3307.3 2598 68.2
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3300.8 2574 67.9
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3298.1 2589 68.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3284.2 2567 67.4
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3282.3 2570 67.6
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3271.5 2576 66.8
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3240.7 2579 66.2
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3236.0 2424 71.0
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3210.6 2555 66.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3206.0 2554 66.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3199.1 2575 65.9
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3194.8 2563 66.1
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3190.2 2553 66.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3188.3 2633 65.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3178.7 2878 61.7
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3173.3 2554 65.7
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3164.8 2574 65.5
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3150.5 2557 65.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3148.6 2562 65.2
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3124.0 2557 65.7
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3120.1 2573 64.5
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3107.8 2560 64.3
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3106.2 2562 65.0
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3088.9 2565 64.4
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3060.4 2567 64.3
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3053.5 2569 63.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3044.6 2567 63.0
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3043.8 2560 63.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3041.1 2561 63.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3039.6 2369 67.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3038.1 2612 63.4
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3035.4 2565 63.6
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3029.2 2578 63.5
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3014.9 2237 70.0
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2955.2 2570 61.9
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2950.6 2560 62.3
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2926.7 2561 61.9
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2924.0 2562 60.9
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2910.9 2556 60.7
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2909.4 2560 60.5
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2892.8 2561 60.6
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2875.5 2566 60.2
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2835.8 2554 59.7
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2833.1 2553 59.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2825.8 2089 70.7
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2817.3 2584 59.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2815.4 2585 59.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2741.5 2589 57.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2733.7 2237 64.7
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2703.3 2637 57.9
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2700.6 1875 74.3
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2662.9 1893 72.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2580.8 2038 66.3
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2452.9 1734 72.8
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2410.2 2329 56.1
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2387.1 1643 74.5
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2214.9 1858 63.9
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2129.8 2698 46.8
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2118.2 1722 65.9
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2077.8 1761 63.7
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2070.0 2787 45.9
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2068.1 1777 62.4
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1947.2 1694 62.0
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1690.6 1189 72.8
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1661.0 2581 41.8
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1640.2 1178 73.0
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1597.4 1174 72.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1593.9 1418 61.6
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1565.4 1099 74.7
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1506.1 1153 70.9
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1478.0 1639 52.0
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1466.1 2353 40.2
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1461.4 2667 37.3
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1445.3 1144 68.0
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1439.1 1189 64.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1406.7 1514 53.0
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1379.8 1175 64.3
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1269.2 854 75.4
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1265.8 1504 49.3
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1203.3 901 67.5
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1113.2 745 75.6
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1091.3 1139 52.7
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.2e-275 952.6 673 74.6
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 3.0e-269 933.7 610 79.7
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.7e-256 891.3 1049 50.8
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 2.6e-241 840.9 1058 47.9
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 3.0e-237 827.4 634 68.5
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 7.9e-222 776.2 923 49.1
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.4e-210 738.0 933 49.0
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 3.0e-181 641.3 760 50.8
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 4.0e-181 641.0 499 66.5
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.0e-180 638.6 844 48.3
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.7e-179 635.6 682 53.8
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.1e-178 631.3 680 51.6
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.6e-166 591.3 617 57.7
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.2e-162 576.6 384 77.6
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 2.3e-160 572.0 489 61.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 3.1e-157 561.6 491 62.1
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.2e-155 555.4 900 40.1
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 2.5e-151 542.0 701 46.9
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.0e-148 532.3 500 60.8
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.4e-138 497.7 548 52.7
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 6.9e-125 454.1 494 51.0
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.1e-118 432.6 486 51.2
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.2e-105 390.2 264 73.1
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.3e-102 377.9 239 82.4
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.3e-94 353.6 348 54.9
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-84 320.5 180 85.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.6e-81 310.1 205 81.5
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.5e-79 301.2 229 66.4
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.2e-78 299.7 180 78.9
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 2.7e-76 292.7 219 66.2
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 1.0e-75 290.8 214 67.3
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 5.4e-69 268.5 151 88.1
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.7e-67 263.5 158 79.1
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.7e-62 246.9 254 55.5
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 3.9e-51 209.1 335 41.5
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.5e-50 204.5 198 62.1
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.4e-47 196.1 252 44.4
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.9e-45 190.3 320 39.4
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 7.8e-44 184.9 1243 25.1
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-43 184.1 327 37.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 4.3e-42 179.1 324 38.0
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 4.9e-38 165.6 321 38.0
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 3.5e-36 159.5 98 80.6
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.3e-35 156.8 116 70.7
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 3.3e-34 152.9 143 57.3
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 7.6e-31 141.7 117 69.2
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 6.6e-27 128.6 145 46.9
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 4.0e-24 119.4 87 69.0
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 2.0e-23 117.1 138 52.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 7.6e-23 115.2 102 67.6
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 7.6e-23 115.2 102 67.6
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 2.7e-20 106.7 120 55.8
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 1.0e-19 104.8 119 48.7
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.5e-18 100.1 132 52.3
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 4.3e-18 99.4 80 65.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.1e-16 94.7 153 39.9
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 3.4e-15 89.7 88 51.1
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.7e-14 87.4 102 50.0
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.6e-12 80.9 171 36.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.1e-12 80.5 105 44.8
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.3e-11 77.8 45 86.7
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 5.1e-11 75.9 61 65.6
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.3e-10 72.8 74 59.5
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 7.4e-10 72.0 50 66.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.3e-09 71.2 67 58.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.3e-09 71.2 67 58.2
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.6e-09 70.9 58 55.2
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.2e-09 68.9 79 59.5
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.4e-08 67.0 58 55.2
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 3.1e-08 66.6 82 43.9
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.6e-07 63.5 58 62.1
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.3e-06 61.2 51 60.8
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.7e-06 60.8 137 35.0


User provided reference genes

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