Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 0.0e+00 2649.0 1432 100.0
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 0.0e+00 2261.5 1524 84.3
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.4e-129 467.6 1350 33.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.9e-124 451.8 1518 31.2
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 8.1e-123 446.4 1326 32.8
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.3e-115 422.5 1534 31.6
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.6e-115 421.0 1245 33.5
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.4e-111 408.3 1536 30.3
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 7.1e-111 406.8 1536 31.4
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.3e-104 386.0 1271 32.7
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.2e-104 385.2 1313 31.6
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.9e-100 372.1 1265 30.8
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-96 359.4 1223 31.0
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.9e-96 358.2 1312 30.6
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.3e-93 349.4 1518 28.5
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.7e-91 341.3 1517 29.0
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.4e-90 339.3 1246 30.3
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.7e-88 332.4 1247 30.0
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 8.4e-88 330.1 1250 29.7
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.4e-87 329.3 1258 31.0
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.9e-87 328.9 1265 30.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.3e-84 317.8 1242 29.5
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.0e-81 308.9 1196 30.7
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 3.4e-81 308.1 1223 29.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 5.9e-81 307.4 1216 31.3
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 7.7e-81 307.0 1509 27.4
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 4.3e-76 291.2 1309 29.6
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 5.7e-76 290.8 1278 29.3
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.1e-74 286.6 1170 31.4
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.4e-74 286.2 1248 28.6
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 3.2e-71 275.0 1475 27.7
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.6e-70 272.7 707 35.5
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 2.7e-70 271.9 1241 29.2
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.0e-69 270.0 1167 30.2
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.6e-68 265.4 786 34.2
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 7.4e-68 263.8 1303 29.5
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.3e-67 263.1 1283 27.7
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 3.7e-67 261.5 775 35.7
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 8.2e-67 260.4 1229 28.2
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.8e-66 259.2 1230 27.9
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 9.1e-66 256.9 1178 30.1
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 2.0e-65 255.8 672 36.2
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 2.0e-65 255.8 1485 26.6
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 3.8e-64 251.5 1298 28.0
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 6.5e-64 250.8 1242 28.4
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.5e-63 249.6 1237 28.9
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.5e-63 248.8 1285 28.4
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.6e-62 245.0 1482 27.5
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 6.1e-62 244.2 817 31.8
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.0e-61 243.4 1233 29.8
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.8e-61 242.7 1325 28.1
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.8e-61 242.7 1504 27.7
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 2.6e-60 238.8 539 38.2
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 7.5e-60 237.3 648 35.8
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.3e-59 236.5 544 35.7
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.4e-58 232.3 301 47.8
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 2.0e-57 229.2 1250 27.0
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.0e-56 226.9 1465 25.8
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 8.5e-56 223.8 1494 26.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.9e-55 222.6 1511 28.8
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.2e-55 221.9 1490 27.0
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.2e-55 221.5 1484 27.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.6e-54 219.5 1499 26.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.7e-54 218.8 1187 28.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.7e-54 218.0 1481 27.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.0e-52 212.6 1494 26.5
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 3.4e-52 211.8 1267 26.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.3e-51 207.6 1121 27.5
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-50 206.5 1185 27.0
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.3e-48 199.9 1203 26.4
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.6e-46 191.8 757 31.2
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.0e-41 176.0 687 30.4
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 8.0e-38 164.1 480 35.4
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 4.0e-37 161.8 298 36.6
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.2e-33 150.2 755 26.9
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.2e-33 150.2 518 32.2
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.0e-33 149.4 386 35.2
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.9e-33 147.9 480 33.1
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 8.6e-32 144.1 511 33.7
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.9e-31 142.9 475 32.8
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.5e-31 142.5 484 32.6
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-30 140.2 656 29.0
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.6e-30 139.8 1288 24.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-30 139.8 308 34.1
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.6e-30 138.7 447 31.1
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.4e-28 132.1 462 31.8
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 3.5e-25 122.1 346 32.9
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 3.6e-22 112.1 513 30.4
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 8.9e-21 107.5 471 29.7
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 8.9e-21 107.5 374 31.8
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.4e-20 105.5 340 32.9
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 9.8e-20 104.0 471 29.5
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.2e-19 102.8 777 26.8
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.1e-18 100.5 516 28.7
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.4e-18 99.4 419 30.5
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 4.1e-18 98.6 524 29.2
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 7.8e-17 94.4 476 28.8
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-15 90.5 528 27.1
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.3e-15 88.6 416 29.3
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.2e-14 87.0 491 26.9
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 2.8e-14 85.9 206 35.9
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 3.1e-13 82.4 948 23.7
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 3.1e-13 82.4 563 27.9
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 8.9e-13 80.9 618 26.2
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 2.2e-11 76.3 149 34.2
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.7e-11 75.5 439 28.5
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 8.4e-11 74.3 604 24.8
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-10 73.9 176 33.0
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.4e-10 73.6 585 26.5
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-10 73.6 424 27.6
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 2.4e-10 72.8 520 27.7
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 4.1e-10 72.0 249 31.3
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 4.1e-10 72.0 249 31.3
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 5.4e-10 71.6 789 24.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 5.4e-10 71.6 474 28.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 7.1e-10 71.2 474 28.1
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 2.1e-09 69.7 1005 22.0
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.3e-08 66.2 153 35.9
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 8.6e-08 64.3 459 26.6
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-07 63.5 189 32.3
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 2.5e-07 62.8 398 26.4
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.5e-07 62.8 158 34.8
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 4.3e-07 62.0 319 28.8
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 5.6e-07 61.6 263 30.4
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 1.6e-06 60.1 757 23.5
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-06 59.3 333 27.9
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 3.6e-06 58.9 430 28.6


User provided reference genes

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