Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.8e-115 418.7 219 100.0
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 5.4e-111 404.4 219 96.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.2e-65 253.8 208 69.2
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 2.2e-64 249.6 218 65.6
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 4.9e-64 248.4 204 68.6
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 6.5e-64 248.1 202 71.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.1e-63 247.3 208 67.8
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.5e-63 246.1 204 68.1
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 3.2e-63 245.7 210 68.1
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 5.5e-63 245.0 202 71.3
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 9.3e-63 244.2 214 63.6
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.2e-62 243.8 208 67.8
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.7e-62 242.7 211 62.6
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.7e-62 242.7 211 62.6
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 6.0e-62 241.5 207 68.6
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 5.1e-61 238.4 210 63.8
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.7e-61 238.0 205 66.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.7e-61 238.0 205 66.3
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.1e-60 237.3 211 62.6
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.1e-60 237.3 208 63.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.9e-60 236.5 211 63.5
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.5e-60 236.1 201 67.2
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 4.3e-60 235.3 202 67.8
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 5.7e-60 235.0 206 65.5
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 5.7e-60 235.0 209 64.6
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 5.7e-60 235.0 205 66.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 9.6e-60 234.2 208 64.4
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.3e-59 233.8 199 64.8
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.3e-59 233.8 217 63.6
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.6e-59 233.4 202 67.3
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.1e-59 233.0 213 62.9
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.7e-59 232.3 215 62.8
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 3.7e-59 232.3 213 64.3
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.8e-59 231.9 199 65.3
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 4.8e-59 231.9 202 67.3
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 6.3e-59 231.5 197 66.5
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 6.3e-59 231.5 201 66.2
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 6.3e-59 231.5 215 64.2
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 8.2e-59 231.1 209 64.1
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.4e-58 230.3 199 67.3
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.1e-58 228.8 185 69.7
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 5.3e-58 228.4 213 62.9
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 9.0e-58 227.6 209 66.0
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.2e-57 227.3 198 63.1
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.5e-57 226.9 225 60.0
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.0e-57 226.5 207 63.3
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 2.6e-57 226.1 190 68.9
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.4e-57 225.7 187 65.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.4e-57 225.7 207 64.3
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 5.9e-57 224.9 207 64.7
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.0e-56 224.2 211 63.5
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-56 223.8 202 65.8
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.3e-56 223.8 211 64.0
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.2e-56 223.0 199 65.8
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 2.2e-56 223.0 211 63.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.8e-56 222.2 212 62.7
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 5.0e-56 221.9 212 61.8
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-55 219.9 241 56.0
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.5e-55 219.5 206 63.6
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 2.5e-55 219.5 198 64.1
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.5e-55 219.5 197 62.4
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.2e-55 219.2 208 62.5
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.2e-55 218.8 227 59.5
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 5.5e-55 218.4 205 62.0
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.5e-55 218.4 218 59.6
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 5.5e-55 218.4 200 63.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 5.5e-55 218.4 202 63.4
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 5.5e-55 218.4 204 63.7
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 7.2e-55 218.0 205 61.5
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.2e-54 217.2 205 62.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-54 217.2 205 62.0
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.2e-54 217.2 205 62.0
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-54 217.2 182 64.8
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.6e-54 216.9 205 62.4
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 2.1e-54 216.5 200 64.5
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.7e-54 216.1 198 62.1
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.7e-54 216.1 198 62.1
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 6.1e-54 214.9 209 63.2
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 7.9e-54 214.5 216 58.3
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.8e-53 213.4 198 61.1
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.0e-53 212.6 207 60.9
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 6.7e-53 211.5 200 62.5
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 2.5e-52 209.5 202 61.9
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.5e-52 209.5 182 64.8
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 2.5e-52 209.5 172 69.2
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 5.7e-52 208.4 181 64.1
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 7.4e-52 208.0 142 77.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 7.4e-52 208.0 203 58.1
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 7.4e-52 208.0 201 61.7
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.3e-51 207.2 209 60.3
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.6e-51 206.8 176 67.6
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.6e-51 206.8 162 72.8
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.8e-51 206.1 168 67.3
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 2.8e-51 206.1 153 75.2
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 4.8e-51 205.3 215 57.7
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 4.8e-51 205.3 182 66.5
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 6.3e-51 204.9 209 59.8
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.1e-50 204.1 206 60.7
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.4e-50 203.8 200 60.5
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.4e-50 203.8 173 68.8
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.8e-50 203.4 153 73.2
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 3.1e-50 202.6 202 59.9
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 4.1e-50 202.2 182 65.4
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 5.3e-50 201.8 210 57.6
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 5.3e-50 201.8 210 57.6
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 5.3e-50 201.8 150 73.3
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 5.3e-50 201.8 201 59.2
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 6.9e-50 201.4 197 60.4
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 6.9e-50 201.4 138 76.8
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.2e-49 200.7 178 65.7
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.2e-49 200.7 201 58.7
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.4e-49 199.1 196 57.7
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 4.5e-49 198.7 212 60.4
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 7.7e-49 198.0 177 66.7
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 8.5e-48 194.5 176 65.3
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.2e-47 191.4 147 72.8
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 9.7e-44 181.0 203 58.1
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.7e-43 179.1 203 57.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.1e-42 177.6 129 72.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.8e-42 176.8 185 58.4
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 5.3e-42 175.3 133 68.4
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.2e-40 169.9 136 64.7
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 5.0e-40 168.7 137 65.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 8.5e-40 167.9 148 62.2
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.4e-39 167.2 207 54.1
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.5e-39 166.4 189 53.4
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 3.6e-30 136.0 118 57.6
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 8.8e-29 131.3 147 53.7
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 7.5e-28 128.3 203 47.8
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-26 124.0 143 54.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.5e-25 119.0 206 41.7
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 9.4e-23 111.3 120 53.3
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 2.3e-21 106.7 74 75.7
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 8.3e-19 98.2 78 66.7
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 8.3e-19 98.2 78 66.7
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 7.7e-17 91.7 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 6.5e-16 88.6 72 68.1
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 2.7e-09 66.6 45 80.0


User provided reference genes

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