Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 3.7e-235 818.1 495 100.0
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 5.8e-220 767.7 498 94.8
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 3.3e-151 539.3 373 70.2
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 7.2e-146 521.5 377 68.2
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 6.1e-145 518.5 376 67.8
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.8e-144 516.9 377 69.2
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.8e-144 516.9 389 67.6
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.0e-144 516.2 377 67.1
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 4.0e-144 515.8 371 68.5
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 5.2e-144 515.4 377 68.7
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 7.5e-143 511.5 385 67.0
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.7e-142 510.4 400 65.8
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 2.2e-142 510.0 373 67.6
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 2.8e-142 509.6 372 68.5
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.4e-141 507.3 382 68.1
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.8e-141 506.9 372 66.7
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.1e-141 505.8 372 66.4
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 5.3e-141 505.4 387 65.1
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.3e-141 505.4 372 66.9
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.2e-140 504.2 369 67.2
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.6e-140 503.8 372 66.4
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 2.0e-140 503.4 377 66.3
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.7e-140 503.1 371 66.6
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.7e-140 503.1 372 65.1
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.9e-140 501.9 372 66.4
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.9e-140 501.9 378 66.1
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 7.7e-140 501.5 378 66.4
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.3e-139 500.7 373 66.2
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.7e-139 500.4 377 65.5
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 3.8e-139 499.2 386 64.8
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 3.8e-139 499.2 372 68.0
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 6.5e-139 498.4 369 67.5
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 8.5e-139 498.0 371 66.0
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 8.5e-139 498.0 378 65.9
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.5e-138 497.3 386 66.3
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 1.9e-138 496.9 372 67.7
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 3.2e-138 496.1 371 66.6
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.2e-137 494.2 372 66.4
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.6e-137 493.8 372 65.3
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.6e-137 493.8 384 64.3
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.1e-137 493.4 386 63.7
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 1.0e-136 491.1 385 62.6
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.8e-136 490.3 372 64.5
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 5.2e-136 488.8 376 63.6
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.2e-135 487.6 368 66.6
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.2e-135 487.6 387 62.3
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.2e-135 487.6 363 64.7
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.2e-135 487.6 372 64.5
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.5e-135 487.3 377 63.4
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.6e-135 486.5 368 66.3
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 2.6e-135 486.5 372 64.5
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.4e-135 486.1 397 62.2
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 4.4e-135 485.7 371 66.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 7.5e-135 485.0 374 65.0
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 4.8e-134 482.3 375 61.9
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 4.8e-134 482.3 392 62.0
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 8.3e-134 481.5 385 60.5
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 8.3e-134 481.5 377 63.4
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.1e-133 481.1 372 64.2
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.4e-133 480.7 376 63.6
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.8e-133 480.3 387 60.7
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 3.1e-133 479.6 374 62.0
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 5.9e-132 475.3 377 62.3
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 7.7e-132 474.9 376 62.5
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 7.7e-132 474.9 371 63.3
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.3e-131 474.2 376 63.6
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 1.7e-131 473.8 352 66.8
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 1.7e-131 473.8 382 61.5
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.9e-130 470.3 387 61.2
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.5e-130 469.9 379 62.0
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.3e-130 469.5 388 61.1
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 4.2e-130 469.2 388 60.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.5e-130 468.8 371 63.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 9.5e-130 468.0 370 63.2
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-129 467.6 371 62.8
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 2.8e-129 466.5 372 61.6
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 8.0e-129 464.9 353 64.9
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 5.2e-128 462.2 373 61.9
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.6e-127 459.9 368 61.4
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.3e-126 457.6 353 63.5
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 2.2e-126 456.8 327 69.4
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 6.3e-126 455.3 362 63.3
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 8.3e-126 454.9 376 60.6
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.1e-125 454.5 376 60.9
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 3.1e-125 453.0 387 60.2
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 4.1e-125 452.6 413 56.9
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 4.5e-124 449.1 334 66.2
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.5e-124 449.1 394 57.9
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.5e-124 449.1 394 57.9
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 7.8e-124 448.4 377 59.7
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.0e-123 448.0 368 59.5
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.3e-123 446.8 387 57.9
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.3e-123 446.8 387 57.9
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 2.9e-123 446.4 387 57.4
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 2.9e-123 446.4 371 59.0
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 3.9e-123 446.0 371 59.0
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 3.9e-123 446.0 387 57.9
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 5.0e-123 445.7 376 60.9
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.1e-122 444.5 373 58.2
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.5e-122 444.1 376 59.6
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.5e-122 443.4 387 57.6
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.2e-121 441.0 382 57.1
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.2e-121 441.0 377 59.7
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 2.1e-121 440.3 387 58.7
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 2.8e-121 439.9 378 58.5
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 6.1e-121 438.7 377 58.4
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.0e-119 433.7 396 57.6
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.7e-118 429.5 376 59.8
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 8.3e-118 428.3 414 54.1
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 4.1e-117 426.0 370 56.8
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 5.4e-117 425.6 382 56.5
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 9.2e-117 424.9 378 55.6
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 6.0e-116 422.2 387 55.8
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 3.6e-113 412.9 325 62.5
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.1e-112 409.8 384 57.0
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 4.4e-111 406.0 280 69.6
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.7e-107 394.0 299 65.6
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 8.6e-107 391.7 394 51.0
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 9.5e-106 388.3 377 55.4
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.8e-105 386.7 303 64.4
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.9e-102 375.9 356 57.0
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-100 371.3 382 51.8
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.2e-100 371.3 266 66.2
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 2.5e-98 363.6 304 58.9
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 4.0e-96 356.3 335 53.4
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 1.6e-92 344.4 307 60.6
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 3.6e-89 333.2 372 50.5
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.5e-87 327.8 307 55.0
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 2.6e-87 327.0 370 47.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 3.0e-83 313.5 391 45.0
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.6e-82 308.5 307 53.7
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 6.0e-76 289.3 392 43.4
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.8e-75 287.7 338 48.2
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.1e-75 286.2 347 47.8
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 9.0e-72 275.4 181 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.3e-54 218.4 314 41.4
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.9e-53 214.5 328 40.9
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.3e-51 207.6 134 70.1
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 2.3e-51 207.6 370 37.6
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 2.3e-51 207.6 370 37.6
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-50 204.9 203 55.2
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.2e-49 199.1 121 76.0
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 3.1e-48 197.2 369 36.0
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.3e-41 172.9 243 43.2
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 3.5e-39 167.2 384 32.8
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.9e-31 139.8 121 57.0
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.5e-26 125.2 397 28.2
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.5e-21 108.6 307 28.0
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.2e-18 99.0 119 50.4
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 3.7e-17 94.0 243 28.0
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.3e-17 93.2 100 52.0
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-14 85.5 53 75.5
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 2.9e-14 84.3 83 51.8
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 2.9e-14 84.3 83 51.8
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 6.6e-14 83.2 83 53.0
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.8e-11 75.1 77 55.8
Glyma.02G139950 Glycine max HOM05D002163 ORTHO05D002386 6.6e-06 56.6 61 49.2


User provided reference genes

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