Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 4.2e-168 594.7 328 100.0
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 4.2e-160 568.2 328 96.3
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 2.6e-109 399.4 329 67.2
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 6.4e-108 394.8 291 72.9
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.1e-104 384.0 330 64.5
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.9e-100 369.4 331 64.7
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 8.4e-100 367.9 331 61.0
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.4e-99 366.3 332 61.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 4.2e-99 365.5 284 68.7
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 7.1e-99 364.8 284 68.3
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 7.1e-99 364.8 275 69.1
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 7.1e-99 364.8 332 60.2
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 9.3e-99 364.4 329 62.3
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.6e-98 363.6 329 62.9
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.6e-98 363.6 272 71.3
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 2.7e-98 362.8 292 66.4
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 3.5e-98 362.5 329 62.6
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 3.5e-98 362.5 272 68.4
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 4.6e-98 362.1 293 65.5
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 7.8e-98 361.3 268 70.5
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.0e-97 360.9 277 72.6
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.3e-97 360.5 272 69.1
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.7e-97 360.1 277 70.0
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 2.3e-97 359.8 291 65.6
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 3.0e-97 359.4 309 63.8
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 3.9e-97 359.0 292 65.1
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 6.6e-97 358.2 299 65.2
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.9e-96 356.7 289 65.7
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.9e-96 356.7 309 64.4
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 4.3e-96 355.5 272 70.2
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 5.6e-96 355.1 272 68.0
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 7.3e-96 354.8 272 68.4
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 7.3e-96 354.8 331 61.6
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.3e-95 354.0 330 61.5
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.6e-95 353.6 329 61.1
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 2.8e-95 352.8 270 69.3
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.6e-95 352.4 306 63.1
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 6.2e-95 351.7 270 69.3
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 6.2e-95 351.7 275 69.1
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 6.2e-95 351.7 325 61.5
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 8.1e-95 351.3 329 61.1
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.1e-94 350.9 273 67.8
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-94 350.9 328 61.3
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 3.1e-94 349.4 275 69.1
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 5.3e-94 348.6 329 61.4
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.5e-93 345.5 329 59.9
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 7.6e-93 344.7 329 60.2
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 9.9e-93 344.4 337 59.3
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.3e-92 344.0 329 59.6
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.9e-92 342.8 331 59.5
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.9e-92 342.8 329 59.9
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 8.4e-92 341.3 291 64.3
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.9e-91 340.1 332 59.3
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.9e-91 340.1 272 66.9
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.4e-91 339.7 270 67.8
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 9.3e-91 337.8 270 67.0
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.2e-90 337.4 271 67.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.6e-90 335.5 308 59.7
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 6.0e-90 335.1 272 66.2
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 1.7e-89 333.6 331 57.7
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.3e-89 333.2 326 58.6
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 5.1e-89 332.0 280 64.6
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 5.1e-89 332.0 302 59.9
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.1e-88 330.9 287 63.8
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.1e-88 330.9 307 59.0
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.5e-88 330.5 276 62.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.5e-88 330.5 272 64.7
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.5e-88 330.5 306 60.1
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.9e-88 330.1 330 56.7
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.9e-88 330.1 271 66.4
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.9e-88 330.1 334 57.5
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 5.6e-88 328.6 272 66.9
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 5.6e-88 328.6 297 61.3
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 9.6e-88 327.8 283 63.3
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-87 327.0 280 64.3
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.6e-87 327.0 280 64.3
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 4.8e-87 325.5 247 68.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 4.8e-87 325.5 289 63.3
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 8.1e-87 324.7 270 65.2
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 8.1e-87 324.7 330 56.4
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.1e-86 324.3 291 63.6
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 2.4e-86 323.2 273 63.0
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 2.4e-86 323.2 272 65.4
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.2e-85 320.9 284 62.0
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 3.4e-85 319.3 238 73.5
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.5e-85 318.9 272 64.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 9.9e-85 317.8 285 64.6
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 2.9e-84 316.2 285 63.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 8.4e-84 314.7 332 56.0
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.4e-83 313.9 319 56.4
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 5.5e-83 312.0 272 63.2
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.1e-83 311.6 273 61.9
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 6.0e-82 308.5 330 55.8
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.5e-80 303.1 329 55.0
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.1e-79 300.1 275 60.4
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.4e-78 297.4 271 61.3
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.3e-76 290.8 272 60.3
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.1e-75 287.7 238 66.0
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 7.9e-74 281.6 240 63.3
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.4e-70 270.0 215 66.0
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.1e-70 269.2 255 58.4
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.0e-69 266.9 336 45.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 7.6e-69 265.0 170 78.8
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 1.0e-65 254.6 334 44.9
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 5.1e-65 252.3 276 52.5
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 4.3e-64 249.2 292 51.4
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 5.7e-64 248.8 159 78.6
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 7.7e-61 238.4 243 52.7
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 2.1e-58 230.3 271 49.8
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-53 214.5 190 62.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 5.9e-53 212.2 229 50.2
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 2.5e-51 206.8 293 43.0
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 9.7e-48 194.9 203 54.7
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 4.4e-40 169.5 149 61.1
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 1.0e-33 148.3 185 48.1
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.7e-29 133.7 270 36.7
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 7.0e-22 109.0 81 66.7
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.7e-20 104.4 72 73.6
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 8.6e-20 102.1 72 72.2
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 3.3e-19 100.1 72 72.2
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 3.6e-18 96.7 121 47.1
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 5.2e-09 66.2 65 56.9
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 2.0e-08 64.3 65 56.9


User provided reference genes

Program Settings