Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.1e-64 248.8 177 100.0
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 5.2e-64 248.1 177 99.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 5.3e-40 168.3 156 67.9
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.7e-38 163.3 156 67.9
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 2.9e-38 162.5 158 78.5
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.4e-38 161.4 156 82.7
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 7.1e-37 157.9 158 78.5
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.7e-36 156.0 158 65.2
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 3.5e-36 155.6 158 62.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.5e-36 155.6 158 62.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.5e-36 155.6 158 62.0
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.5e-36 155.6 161 76.4
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 151 78.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 153 68.6
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.3e-35 153.7 157 63.1
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.3e-35 153.7 166 61.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 151 78.8
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.7e-35 153.3 151 78.8
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.7e-35 153.3 156 67.3
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.0e-35 152.5 150 68.0
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.9e-35 152.1 158 61.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.6e-35 151.4 153 79.7
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.5e-34 149.4 150 67.3
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.3e-34 149.1 158 63.3
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 4.3e-34 148.7 162 77.2
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.3e-34 147.9 166 62.7
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.3e-33 147.1 155 63.9
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.6e-33 146.7 154 63.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.6e-33 146.7 163 74.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.6e-33 145.6 175 72.0
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 4.8e-33 145.2 154 79.9
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 4.8e-33 145.2 154 79.9
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 4.8e-33 145.2 153 79.1
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 4.8e-33 145.2 169 74.6
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 4.8e-33 145.2 169 74.6
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.2e-33 144.8 153 63.4
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 6.2e-33 144.8 153 80.4
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 6.2e-33 144.8 158 74.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.1e-33 144.4 152 63.8
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 8.1e-33 144.4 162 63.6
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 8.1e-33 144.4 176 71.0
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.1e-32 144.1 158 64.6
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.1e-32 144.1 154 63.0
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.1e-32 144.1 155 76.1
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.8e-32 143.3 150 64.0
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.8e-32 143.3 158 72.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.4e-32 142.9 149 65.8
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.1e-32 142.5 167 58.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 5.3e-32 141.7 149 76.5
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 5.3e-32 141.7 163 59.5
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 5.3e-32 141.7 162 77.2
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.3e-32 141.7 159 61.6
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 5.3e-32 141.7 153 64.1
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 6.9e-32 141.4 163 62.6
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.2e-31 140.6 159 47.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.5e-31 140.2 150 74.7
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.0e-31 139.8 157 77.1
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.0e-31 139.8 154 75.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.5e-31 138.7 163 68.7
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 9.9e-31 137.5 148 81.8
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.3e-30 137.1 150 66.0
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.7e-30 136.7 151 72.8
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.7e-30 136.7 151 74.8
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.2e-30 136.3 153 77.1
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 150 74.7
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.8e-30 135.6 153 67.3
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 3.8e-30 135.6 136 74.3
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 4.9e-30 135.2 149 75.2
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.9e-30 135.2 151 72.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.9e-30 135.2 160 70.6
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 6.4e-30 134.8 157 70.7
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 6.4e-30 134.8 157 72.0
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 8.4e-30 134.4 150 62.7
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.1e-29 134.0 148 82.4
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.4e-29 132.9 153 76.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 4.2e-29 132.1 156 55.8
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.2e-29 132.1 156 59.6
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 7.1e-29 131.3 159 70.4
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 7.1e-29 131.3 158 60.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 9.3e-29 131.0 153 73.2
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 165 72.7
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.2e-28 130.6 142 74.6
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.6e-28 130.2 151 72.2
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 3.5e-28 129.0 151 59.6
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.6e-28 128.6 150 72.0
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 4.6e-28 128.6 142 76.1
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 4.6e-28 128.6 142 77.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 2.3e-27 126.3 146 64.4
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 2.3e-27 126.3 142 69.7
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.9e-27 125.6 158 74.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 8.7e-27 124.4 165 66.7
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.5e-26 123.6 151 47.0
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.9e-26 123.2 160 61.9
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.9e-26 123.2 219 35.6
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.5e-26 122.9 160 72.5
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.3e-26 122.5 160 71.9
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.3e-26 122.1 158 72.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 4.3e-26 122.1 160 72.5
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 4.3e-26 122.1 160 72.5
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 4.3e-26 122.1 132 65.2
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 4.3e-26 122.1 142 72.5
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 5.6e-26 121.7 160 71.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 7.4e-26 121.3 160 56.9
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 7.4e-26 121.3 158 72.8
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 9.6e-26 120.9 160 72.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 9.6e-26 120.9 156 43.6
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 9.6e-26 120.9 168 52.4
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.1e-25 119.8 157 59.2
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.7e-25 119.0 143 62.2
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.7e-25 119.0 142 57.7
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.2e-25 118.2 146 76.0
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.4e-24 117.1 151 58.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-24 117.1 151 58.9
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-24 117.1 151 58.9
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.4e-24 117.1 151 58.9
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.4e-24 117.1 151 58.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.4e-24 117.1 149 59.7
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.4e-24 117.1 132 69.7
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.1e-24 115.9 151 47.0
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.1e-24 115.9 150 60.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 4.0e-24 115.5 153 56.9
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.5e-23 113.6 160 56.2
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.6e-23 112.8 160 55.6
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.6e-23 112.8 142 61.3
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 3.4e-23 112.5 148 55.4
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.5e-23 112.1 154 43.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.5e-23 112.1 134 60.4
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.8e-23 111.7 154 42.9
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.8e-23 111.7 142 61.3
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 5.8e-23 111.7 142 61.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.0e-22 110.9 154 42.9
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.0e-22 110.9 142 61.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.7e-22 110.2 152 71.1
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.2e-22 109.8 146 42.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.9e-21 106.7 94 87.2
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.1e-21 104.8 152 70.4
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.3e-19 100.5 152 40.1
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.9e-18 96.7 121 60.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.1e-16 89.0 98 72.4
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 3.4e-15 85.9 138 55.1
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.9e-14 82.8 113 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 7.9e-12 74.7 108 35.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.3e-11 73.2 106 56.6
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 2.3e-11 73.2 99 60.6
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.9e-11 72.4 124 49.2
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.3e-10 69.3 65 47.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.3e-10 69.3 79 73.4
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 9.0e-08 61.2 62 45.2
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.0e-06 57.8 32 65.6


User provided reference genes

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