Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.8e-216 755.7 411 100.0
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.4e-199 698.0 356 95.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 7.8e-180 634.0 358 81.6
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.1e-161 572.8 358 72.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 9.0e-160 567.4 359 71.6
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.2e-159 567.0 357 72.8
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.3e-158 563.5 359 72.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.9e-158 562.4 357 71.7
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 6.5e-158 561.2 359 72.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 7.9e-156 554.3 359 71.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.0e-155 553.9 358 71.8
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 8.7e-155 550.8 359 70.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 8.7e-155 550.8 358 70.7
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-154 550.4 357 71.4
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.9e-154 549.7 357 71.4
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.5e-154 549.3 343 73.2
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.5e-154 549.3 358 70.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.7e-154 548.1 345 72.8
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 9.7e-154 547.4 356 71.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.3e-153 547.0 358 70.1
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 3.7e-153 545.4 361 69.8
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.7e-153 545.4 357 72.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 8.2e-153 544.3 359 70.5
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.8e-152 543.1 361 70.1
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 4.1e-152 542.0 360 69.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.1e-152 542.0 360 70.0
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 5.3e-152 541.6 358 70.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.9e-152 541.2 361 69.8
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.2e-151 540.4 358 69.8
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.0e-151 539.7 358 69.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.6e-151 539.3 357 70.0
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.6e-151 539.3 361 69.8
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 3.8e-150 535.4 358 67.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.8e-150 535.4 359 69.1
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 5.0e-150 535.0 358 69.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 8.5e-150 534.3 358 69.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.4e-149 533.5 345 71.0
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.9e-149 533.1 359 69.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.2e-149 532.3 348 71.3
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 4.2e-149 531.9 344 69.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 4.2e-149 531.9 359 68.8
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 9.4e-149 530.8 345 70.7
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.1e-148 529.6 358 69.0
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.1e-148 529.6 361 67.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.6e-148 528.5 338 70.1
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 4.6e-148 528.5 357 68.3
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 7.9e-148 527.7 359 68.8
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.0e-147 527.3 344 70.6
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.0e-147 527.3 358 68.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 6.7e-147 524.6 360 67.5
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-146 523.5 358 68.7
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.5e-146 523.5 358 68.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.5e-146 523.5 359 66.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 3.3e-146 522.3 358 68.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.3e-145 520.4 358 68.4
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-145 520.0 360 67.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.7e-145 520.0 358 67.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-145 519.6 360 67.8
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.7e-145 518.8 358 66.8
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.7e-145 518.8 358 66.8
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.7e-145 518.8 337 72.4
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 8.2e-145 517.7 360 67.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 8.2e-145 517.7 358 66.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.4e-144 516.9 356 66.9
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.8e-144 516.5 356 66.6
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 2.4e-144 516.2 358 67.6
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.4e-144 516.2 358 65.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 9.1e-144 514.2 357 66.4
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.2e-143 513.8 332 70.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.5e-143 513.5 360 66.1
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.7e-142 510.0 372 64.2
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.9e-142 509.2 357 65.5
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.8e-142 508.8 359 66.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.8e-142 508.8 359 66.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 3.8e-142 508.8 359 66.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.0e-142 508.4 350 68.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 6.5e-142 508.1 361 65.1
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.1e-141 507.3 357 65.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.9e-141 506.5 360 65.8
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 4.2e-141 505.4 361 65.1
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.2e-141 504.6 360 66.4
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.4e-141 504.2 359 66.3
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-140 503.8 358 65.6
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.1e-140 503.1 358 63.7
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 6.1e-140 501.5 358 65.6
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 6.1e-140 501.5 338 67.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 7.9e-140 501.1 358 64.8
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.0e-139 500.7 369 62.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.4e-139 500.4 360 65.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.4e-139 500.4 345 67.8
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 8.8e-139 497.7 343 67.1
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.0e-138 496.5 353 65.2
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.6e-138 496.1 354 65.3
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 9.7e-138 494.2 358 64.8
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.7e-137 493.4 358 63.7
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.7e-137 492.3 359 62.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 6.3e-137 491.5 336 67.3
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 8.2e-137 491.1 339 66.7
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.1e-136 487.6 358 62.0
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 9.1e-136 487.6 359 63.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.6e-135 486.1 345 64.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-134 483.4 321 65.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.9e-134 482.6 364 62.9
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 3.2e-133 479.2 359 63.2
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 3.2e-133 479.2 350 63.1
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.3e-131 473.0 363 61.4
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 6.7e-131 471.5 306 69.3
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 6.7e-131 471.5 360 60.6
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.7e-129 466.8 363 60.9
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.1e-128 464.2 364 61.8
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.0e-128 461.5 310 67.4
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.8e-126 455.7 348 61.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.5e-125 453.8 343 61.8
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 3.2e-125 452.6 341 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 9.8e-122 441.0 338 60.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.3e-118 430.6 355 58.6
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.3e-118 430.6 358 57.8
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 9.4e-117 424.5 343 57.7
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.2e-114 417.5 342 57.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.6e-114 416.4 303 60.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.3e-113 414.1 366 54.9
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.7e-113 413.7 323 62.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 7.0e-112 408.3 364 54.7
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.8e-110 402.5 232 76.3
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.9e-109 400.2 340 57.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 4.7e-108 395.6 322 55.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-107 394.0 284 66.5
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.5e-103 379.4 346 50.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 4.6e-103 379.0 361 52.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-99 366.7 232 71.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-94 349.7 198 78.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 5.0e-94 349.0 202 77.2
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 8.6e-94 348.2 311 53.7
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.9e-89 333.2 198 72.2
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.2e-88 328.2 240 66.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.6e-82 310.1 219 66.2
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-80 304.7 177 77.4
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.7e-79 300.1 231 61.5
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 6.6e-78 295.4 254 54.7
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 7.1e-72 275.4 428 36.0
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.7e-70 270.8 301 45.2
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.9e-69 267.3 343 39.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.6e-68 263.1 229 56.8
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.8e-65 253.1 224 54.0
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.7e-63 246.9 221 55.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.4e-58 229.9 357 35.3
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 6.7e-54 215.7 194 55.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.8e-51 207.6 334 35.0
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.4e-43 180.6 124 69.4
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.7e-29 132.9 148 46.6
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.1e-27 127.1 116 53.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.2e-26 125.2 108 51.9
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.1e-22 109.8 64 68.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 4.4e-21 106.7 57 80.7


User provided reference genes

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