Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 0.0e+00 1827.8 896 100.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 0.0e+00 1748.4 896 95.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.9e-267 924.9 740 61.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 9.5e-263 910.6 745 59.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 4.7e-262 908.3 733 61.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.4e-252 875.5 699 60.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.7e-251 873.2 697 60.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.4e-250 869.4 720 59.2
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.4e-250 868.2 720 58.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.3e-248 862.8 719 58.7
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 3.3e-247 859.0 685 60.6
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.2e-246 857.1 726 58.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.2e-246 857.1 742 57.4
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.8e-246 855.9 742 57.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.1e-245 854.0 744 57.4
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.4e-245 853.6 727 57.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.8e-245 853.2 743 56.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 4.0e-245 852.0 725 57.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 8.9e-245 850.9 738 56.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.6e-244 849.4 662 63.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 2.6e-244 849.4 771 55.5
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.8e-244 848.2 743 56.3
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 5.8e-244 848.2 738 56.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 5.8e-244 848.2 739 57.8
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.5e-244 847.8 702 59.3
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.9e-243 845.9 718 58.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.1e-242 844.0 734 56.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-242 843.6 744 56.6
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.9e-242 843.2 740 57.2
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.4e-242 842.8 744 56.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 4.1e-242 842.0 684 60.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.2e-241 840.5 733 55.9
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.1e-241 839.7 762 55.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.5e-241 839.0 742 56.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 4.6e-241 838.6 720 57.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 7.8e-241 837.8 741 55.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.7e-240 836.6 742 56.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.3e-240 836.3 740 56.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.6e-240 834.7 700 59.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 8.6e-240 834.3 746 55.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.5e-239 832.8 709 56.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.3e-239 832.4 733 55.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.3e-239 832.4 724 55.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.3e-239 832.0 713 55.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 5.6e-239 831.6 746 56.3
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 5.6e-239 831.6 743 57.2
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.3e-239 831.2 713 55.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 4.7e-238 828.6 746 55.1
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.1e-238 827.8 700 58.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.2e-236 823.9 684 57.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.2e-236 823.9 743 55.9
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.5e-236 823.5 700 58.6
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.6e-236 822.8 692 57.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 4.4e-236 822.0 744 55.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.9e-236 820.8 739 55.5
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-234 817.4 700 58.0
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.9e-234 816.6 728 54.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.4e-234 815.1 689 58.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.6e-233 813.5 694 57.6
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-232 810.1 752 54.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.7e-232 810.1 624 63.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.5e-231 806.2 683 57.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 7.3e-231 804.7 693 58.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 7.3e-231 804.7 685 57.1
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 9.6e-231 804.3 694 56.8
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.2e-230 803.9 715 55.0
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-229 800.0 762 53.7
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.9e-228 794.3 779 52.9
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 9.3e-226 787.7 683 54.8
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 6.0e-225 785.0 689 57.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 6.6e-224 781.6 747 51.8
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.1e-223 780.8 764 53.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 7.3e-223 778.1 685 55.6
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.3e-222 777.3 691 56.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.0e-220 770.0 742 53.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.8e-219 765.8 697 53.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 6.4e-219 765.0 699 53.1
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.1e-218 764.2 685 53.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.4e-218 763.1 687 53.4
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.4e-218 763.1 906 46.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 3.2e-218 762.7 689 55.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 7.1e-218 761.5 692 53.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.1e-217 760.0 691 53.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.7e-217 759.6 689 53.6
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.7e-217 759.6 695 52.4
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.3e-216 757.3 596 60.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.9e-216 755.7 639 57.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.7e-216 755.0 724 50.8
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.3e-215 752.7 695 53.5
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.3e-215 752.7 748 51.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.6e-215 751.9 748 50.4
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.4e-215 751.5 688 53.6
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 9.6e-215 751.1 694 52.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.6e-214 750.4 697 51.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.1e-214 750.0 697 51.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.1e-214 750.0 697 51.8
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 6.2e-214 748.4 747 50.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 6.9e-213 745.0 687 52.3
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.2e-212 744.2 749 50.6
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.6e-212 743.0 766 49.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.4e-210 736.5 692 53.3
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.6e-209 732.3 700 52.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 7.9e-209 731.5 701 53.5
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.9e-209 731.5 691 51.7
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.3e-208 730.7 686 51.3
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.9e-208 729.2 691 52.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.1e-207 727.6 597 59.5
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.3e-207 725.7 762 50.8
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.6e-207 725.3 729 51.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.3e-205 718.8 623 56.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.2e-203 713.4 719 51.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 6.5e-203 711.8 684 51.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.5e-202 708.8 697 52.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-201 707.6 789 48.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-200 703.0 689 52.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-199 700.3 630 54.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.4e-199 698.4 730 49.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 5.3e-197 692.2 688 52.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.6e-196 689.9 730 47.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.5e-188 664.1 540 60.7
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.5e-188 664.1 653 50.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-186 656.8 677 51.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.7e-182 642.9 687 49.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.9e-180 635.6 688 48.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.5e-179 632.1 691 47.5
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 7.9e-177 625.2 541 55.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.1e-173 613.2 700 45.4
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.8e-166 589.3 689 46.0
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 4.1e-165 586.3 725 44.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 4.5e-164 582.8 566 53.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.5e-162 575.9 736 43.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.0e-155 552.7 550 51.3
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 9.5e-154 548.5 287 89.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-138 496.5 325 68.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 7.8e-132 475.7 424 51.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.0e-127 461.1 384 57.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 6.9e-104 382.9 214 79.4
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 9.3e-101 372.5 415 47.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.3e-99 367.9 476 43.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.1e-98 365.5 387 45.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 7.4e-98 362.8 561 37.8
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 4.8e-97 360.1 413 46.2
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 6.5e-86 323.2 579 33.7
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.3e-83 314.7 549 34.4
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.9e-82 311.6 312 45.2
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 5.9e-71 273.5 338 45.6
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 8.5e-62 243.0 156 71.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-60 238.8 214 53.7
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-55 222.6 139 71.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.0e-51 209.5 219 47.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 8.2e-49 199.9 233 45.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.7e-42 177.2 117 65.0
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.1e-40 171.4 120 61.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.8e-38 164.5 99 73.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.8e-38 164.5 99 73.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.8e-38 164.5 99 73.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.6e-38 163.7 396 31.1
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.1e-37 162.9 259 39.0
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.7e-33 147.9 158 46.8
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 8.3e-33 146.7 221 39.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 2.9e-25 121.7 181 39.2
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 9.5e-21 106.7 265 31.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 8.0e-20 103.6 267 28.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.9e-19 100.1 72 65.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 4.4e-18 97.8 59 72.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-14 86.7 147 36.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.1e-13 83.2 112 41.1
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.6e-13 80.9 158 32.3
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 9.5e-13 80.1 54 68.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-11 75.9 182 28.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.8e-11 73.9 43 69.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.8e-11 73.9 43 69.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.4e-08 66.2 212 27.8


User provided reference genes

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