Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.4e-189 664.8 332 100.0
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 8.0e-183 643.7 332 97.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.0e-129 467.2 325 70.8
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 7.4e-128 461.1 323 70.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 9.6e-128 460.7 325 70.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.6e-127 459.9 325 70.2
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.0e-126 455.3 325 70.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 5.3e-126 454.9 325 68.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 6.9e-126 454.5 326 68.4
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 6.9e-126 454.5 325 67.7
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.5e-125 453.4 326 68.4
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.4e-125 452.2 324 69.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.5e-125 451.8 328 68.9
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.9e-124 449.1 326 66.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.8e-124 448.7 321 69.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 8.4e-124 447.6 326 67.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.2e-123 445.7 326 66.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.2e-123 445.7 326 66.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 5.5e-123 444.9 326 68.1
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.2e-122 443.7 326 66.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.6e-122 441.8 324 68.2
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 6.0e-122 441.4 323 67.5
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 6.0e-122 441.4 326 66.6
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 6.0e-122 441.4 334 66.5
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 6.0e-122 441.4 323 67.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.0e-122 441.4 323 65.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.0e-121 440.7 320 67.2
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 3.9e-121 438.7 323 67.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.9e-121 438.7 323 65.3
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 6.7e-121 438.0 323 66.9
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 6.7e-121 438.0 325 66.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 6.7e-121 438.0 318 66.7
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 8.7e-121 437.6 321 67.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.5e-120 436.8 323 66.6
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.9e-120 436.4 325 66.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.9e-120 436.4 323 66.9
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-120 436.4 323 65.0
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.9e-120 436.4 322 67.7
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 3.3e-120 435.6 323 67.2
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 4.3e-120 435.3 321 66.7
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 5.6e-120 434.9 323 65.9
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 7.4e-120 434.5 323 66.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 9.6e-120 434.1 323 66.6
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 9.6e-120 434.1 328 64.9
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.7e-119 432.2 328 64.6
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 6.2e-119 431.4 323 65.6
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 6.2e-119 431.4 326 64.4
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 8.2e-119 431.0 328 64.0
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.1e-118 430.6 320 65.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.1e-118 430.6 323 65.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.4e-118 429.5 323 65.6
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 3.1e-118 429.1 323 66.9
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.3e-118 428.3 325 66.2
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.3e-118 428.3 328 64.9
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 9.0e-118 427.6 323 64.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 2.0e-117 426.4 322 65.5
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.7e-116 423.3 325 65.5
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.2e-116 422.9 323 64.4
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.9e-116 422.5 324 63.9
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.9e-116 421.8 323 64.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.5e-116 421.4 322 64.3
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.1e-115 420.6 325 64.3
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.4e-115 420.2 326 64.4
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.5e-115 419.5 323 64.7
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.5e-115 419.5 321 64.5
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 4.2e-115 418.7 309 66.3
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.2e-115 418.7 329 63.5
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 7.1e-115 417.9 325 64.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.6e-114 416.8 323 65.0
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.1e-114 416.4 326 62.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 6.0e-114 414.8 326 62.9
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 7.9e-114 414.5 324 64.2
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 7.9e-114 414.5 325 63.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.8e-113 413.3 323 63.8
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 3.9e-113 412.1 325 64.6
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.5e-112 410.2 321 63.9
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 9.7e-112 407.5 328 63.1
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.8e-110 403.3 326 60.1
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.4e-110 402.9 324 62.0
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.1e-110 402.1 323 61.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 6.9e-110 401.4 370 56.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.4e-109 399.1 307 63.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.6e-109 397.9 323 60.4
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.6e-109 397.9 326 62.3
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.0e-108 395.2 306 64.4
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.6e-106 389.0 319 61.1
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 6.1e-106 388.3 325 59.4
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 5.1e-105 385.2 278 68.7
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.5e-104 383.6 325 58.5
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.9e-104 383.3 332 59.0
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.7e-104 381.7 319 59.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 7.4e-104 381.3 325 58.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.7e-103 380.2 325 57.5
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.8e-103 379.4 325 58.2
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 6.3e-103 378.3 325 57.5
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 6.3e-103 378.3 319 59.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 8.2e-103 377.9 325 59.1
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.4e-102 376.3 325 58.8
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.4e-102 376.3 325 58.8
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 5.3e-102 375.2 324 57.1
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 5.3e-102 375.2 420 52.1
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 6.9e-102 374.8 324 57.1
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.6e-101 372.9 289 65.1
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.4e-101 372.5 326 58.6
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.9e-100 369.4 265 68.7
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.9e-100 369.4 325 56.9
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.4e-99 367.1 294 63.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.9e-99 366.7 322 58.4
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.7e-98 362.8 376 52.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.7e-96 355.1 323 57.3
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 4.8e-95 352.1 254 68.9
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.1e-94 349.0 323 56.0
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.3e-92 344.0 267 64.4
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-91 340.5 288 60.1
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 4.2e-91 339.0 324 52.5
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.7e-90 335.5 282 56.7
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-89 333.2 323 53.9
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 4.4e-88 328.9 544 37.9
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.0e-86 321.6 325 54.5
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 3.5e-85 319.3 312 53.2
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.5e-83 313.9 282 55.7
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.4e-81 307.4 310 49.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.8e-81 307.0 310 49.0
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.8e-81 307.0 684 32.6
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 6.3e-79 298.5 261 58.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 6.3e-79 298.5 221 66.5
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.2e-75 285.8 312 50.3
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.0e-73 281.2 210 67.6
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 2.0e-72 276.9 229 59.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 7.2e-67 258.5 222 58.6
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 9.8e-64 248.1 180 67.8
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 9.8e-56 221.5 303 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.2e-42 177.9 193 46.1
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.2e-31 140.6 97 71.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.5e-29 133.3 99 61.6
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.4e-25 121.3 86 69.8
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.8e-25 120.9 94 58.5
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.4e-25 120.6 329 27.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.3e-25 119.4 94 58.5
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 5.3e-25 119.4 99 56.6
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.0e-24 117.5 74 70.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 4.9e-23 112.8 118 54.2
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 4.0e-17 93.2 60 76.7
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 9.9e-16 88.6 80 55.0
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 4.2e-14 83.2 71 56.3
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 9.0e-09 65.5 56 57.1
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 4.5e-08 63.2 104 43.3
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.2e-06 57.0 51 56.9
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.2e-06 57.0 51 56.9
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 4.2e-06 56.6 51 56.9


User provided reference genes

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