Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.3e-134 483.0 243 100.0
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 2.8e-76 289.3 164 89.0
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 5.7e-69 265.0 170 81.2
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 1.4e-62 243.8 164 75.6
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.8e-62 243.4 167 73.7
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.5e-61 240.4 169 72.2
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 2.5e-61 239.6 164 75.0
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 4.3e-61 238.8 208 63.0
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.3e-60 237.3 170 71.2
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.3e-60 237.3 167 72.5
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.7e-60 236.9 165 73.3
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.7e-60 236.9 167 70.1
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 2.2e-60 236.5 166 71.1
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.2e-60 236.5 166 72.3
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 2.8e-60 236.1 160 75.0
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 3.7e-60 235.7 167 71.3
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 3.7e-60 235.7 167 71.3
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 3.7e-60 235.7 166 71.1
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 6.3e-60 235.0 168 71.4
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 8.2e-60 234.6 163 71.2
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 1.4e-59 233.8 167 73.7
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.8e-59 233.4 163 71.8
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 2.4e-59 233.0 183 68.3
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 2.4e-59 233.0 167 71.3
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 2.4e-59 233.0 168 72.0
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.4e-59 233.0 167 71.9
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 3.1e-59 232.6 168 67.3
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.1e-59 232.6 162 74.7
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 4.1e-59 232.3 167 68.9
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 4.1e-59 232.3 164 72.0
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 5.3e-59 231.9 168 70.8
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.1e-59 231.1 165 69.7
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.1e-59 231.1 165 72.1
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 9.1e-59 231.1 163 71.2
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 9.1e-59 231.1 167 68.3
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 9.1e-59 231.1 177 68.4
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 9.1e-59 231.1 181 68.5
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.2e-58 230.7 167 67.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 1.5e-58 230.3 167 68.9
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 1.5e-58 230.3 165 72.1
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 1.5e-58 230.3 167 68.9
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 2.0e-58 229.9 166 69.9
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.0e-58 229.9 161 72.0
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 2.0e-58 229.9 165 70.9
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 2.0e-58 229.9 167 67.7
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.6e-58 229.6 145 77.9
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.6e-58 229.6 145 77.9
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 3.4e-58 229.2 167 70.7
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 3.4e-58 229.2 166 72.3
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 4.5e-58 228.8 192 60.9
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 4.5e-58 228.8 166 69.3
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 7.7e-58 228.0 164 70.7
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 7.7e-58 228.0 167 67.1
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.3e-57 227.3 166 70.5
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.3e-57 227.3 162 72.8
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 1.7e-57 226.9 161 70.2
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.7e-57 226.9 164 71.3
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.9e-57 226.1 165 69.7
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.9e-57 226.1 168 69.0
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 3.8e-57 225.7 166 71.1
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 5.0e-57 225.3 176 65.9
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 5.0e-57 225.3 166 68.1
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 5.0e-57 225.3 167 68.3
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 5.0e-57 225.3 137 81.0
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 5.0e-57 225.3 137 81.0
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 1.1e-56 224.2 137 81.0
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 1.4e-56 223.8 161 70.2
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 1.4e-56 223.8 163 69.3
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 1.4e-56 223.8 163 69.3
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 1.4e-56 223.8 163 69.3
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.4e-56 223.8 169 68.6
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 1.4e-56 223.8 168 68.5
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 1.9e-56 223.4 163 69.3
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 1.9e-56 223.4 137 81.0
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.9e-56 223.4 155 75.5
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 2.5e-56 223.0 163 68.1
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 3.2e-56 222.6 170 67.6
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 3.2e-56 222.6 166 68.7
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.5e-56 221.9 165 69.1
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 5.5e-56 221.9 181 66.3
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 5.5e-56 221.9 159 69.8
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 5.5e-56 221.9 150 73.3
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 7.2e-56 221.5 168 68.5
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 1.2e-55 220.7 146 75.3
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 2.1e-55 219.9 181 64.6
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 3.6e-55 219.2 141 75.2
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 3.6e-55 219.2 161 68.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 4.7e-55 218.8 216 55.6
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 6.1e-55 218.4 165 68.5
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 6.1e-55 218.4 160 70.0
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 7.9e-55 218.0 136 77.9
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 2.3e-54 216.5 170 67.1
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 2.3e-54 216.5 167 65.3
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 2.3e-54 216.5 161 68.3
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 3.0e-54 216.1 136 77.2
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 5.1e-54 215.3 170 67.6
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 5.1e-54 215.3 145 73.8
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.5e-53 213.8 167 63.5
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.0e-53 213.4 181 61.3
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 3.3e-53 212.6 186 60.8
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 3.3e-53 212.6 170 63.5
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.4e-53 212.2 159 67.9
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.8e-52 209.5 163 66.3
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 6.3e-52 208.4 164 64.6
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.1e-51 207.6 199 58.8
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.4e-51 207.2 157 67.5
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.4e-51 206.5 176 62.5
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.4e-51 206.5 138 73.2
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 4.1e-51 205.7 208 54.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.5e-50 203.8 168 63.7
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 5.9e-50 201.8 166 63.3
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 1.0e-49 201.1 136 71.3
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.5e-48 197.2 172 60.5
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 2.5e-48 196.4 161 65.2
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 1.2e-47 194.1 172 58.1
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 3.0e-46 189.5 171 58.5
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 4.4e-45 185.7 136 66.2
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 2.2e-44 183.3 136 66.9
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 2.9e-41 172.9 164 51.2
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 6.3e-36 155.2 174 51.7
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 1.1e-32 144.4 138 54.3
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.1e-31 140.2 120 57.5
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.7e-31 139.8 120 59.2
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 9.8e-29 131.3 141 50.4
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 2.8e-28 129.8 169 47.3
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 2.8e-28 129.8 79 74.7
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 1.4e-27 127.5 141 48.2
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.4e-27 127.5 141 48.9
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.8e-27 127.1 120 55.0
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 2.3e-25 120.2 141 43.3
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 5.0e-25 119.0 80 71.2
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 8.6e-25 118.2 100 55.0
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 2.5e-24 116.7 110 54.5
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 5.5e-24 115.5 136 46.3
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 4.7e-23 112.5 93 58.1
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 3.0e-22 109.8 91 67.0
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 6.8e-22 108.6 121 54.5
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 8.9e-22 108.2 91 65.9
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.7e-20 104.0 69 68.1
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 3.7e-20 102.8 85 70.6
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 6.3e-20 102.1 88 54.5
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 6.3e-20 102.1 98 60.2
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 8.3e-20 101.7 86 60.5
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.4e-19 100.9 91 65.9
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.4e-19 100.1 102 61.8
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.1e-19 99.4 82 69.5
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 7.0e-19 98.6 70 65.7
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 1.2e-18 97.8 86 62.8
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 2.7e-18 96.7 137 48.2
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 1.0e-17 94.7 73 67.1
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.5e-16 90.9 71 69.0
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.9e-16 90.5 61 75.4
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 1.6e-15 87.4 56 66.1
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.4e-13 79.3 89 47.2
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 9.8e-13 78.2 111 45.9
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 1.7e-12 77.4 92 47.8
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 3.3e-08 63.2 113 37.2
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 5.6e-08 62.4 114 41.2
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 2.8e-07 60.1 48 66.7
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 4.7e-07 59.3 109 42.2
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 4.7e-07 59.3 59 59.3
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 6.2e-07 58.9 42 64.3
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.8e-06 57.4 67 49.3
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.8e-06 57.4 44 61.4
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 6.8e-06 55.5 34 76.5
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 8.9e-06 55.1 53 56.6


User provided reference genes

Program Settings