Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 8.1e-230 800.0 401 100.0
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.9e-227 791.6 401 98.8
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.6e-190 669.5 400 80.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 9.0e-189 663.7 400 81.0
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 3.4e-188 661.8 401 81.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.5e-188 661.4 401 81.5
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.0e-187 660.2 400 79.8
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 1.7e-187 659.4 400 80.2
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 3.8e-187 658.3 400 79.8
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 5.0e-187 657.9 400 79.2
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 5.0e-187 657.9 400 78.8
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 5.0e-187 657.9 401 80.8
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.9e-186 656.0 401 80.3
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.5e-186 655.6 393 81.7
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 4.2e-186 654.8 400 79.5
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 5.5e-186 654.4 400 79.0
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 5.5e-186 654.4 400 79.2
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 7.2e-186 654.1 401 78.6
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 6.1e-185 651.0 401 78.8
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 6.1e-185 651.0 424 76.2
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.3e-184 649.8 401 78.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 2.3e-184 649.0 400 79.0
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 3.9e-184 648.3 400 80.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 6.7e-184 647.5 397 78.8
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 8.7e-184 647.1 400 79.0
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.5e-183 646.4 400 78.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.9e-183 646.0 401 78.6
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.5e-183 645.6 400 79.2
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.3e-183 644.8 401 77.8
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.7e-183 644.4 400 78.8
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 9.7e-183 643.7 401 77.3
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.6e-182 642.9 396 78.5
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.2e-182 642.5 393 79.1
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 2.2e-182 642.5 398 79.1
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.1e-181 640.2 400 78.5
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.1e-181 640.2 400 78.8
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.4e-181 639.8 400 77.8
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.4e-181 639.8 397 79.6
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 3.1e-181 638.6 396 78.3
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 4.1e-181 638.3 400 78.2
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 9.0e-181 637.1 400 78.0
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.0e-180 636.0 400 77.8
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 4.5e-180 634.8 397 77.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 4.5e-180 634.8 397 77.8
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 5.9e-180 634.4 402 77.6
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.7e-179 632.9 399 76.7
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.7e-179 632.9 405 76.8
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.7e-179 632.9 400 77.0
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 2.9e-179 632.1 402 77.1
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.8e-179 631.7 398 77.6
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 8.5e-179 630.6 400 78.0
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 8.5e-179 630.6 400 76.8
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 3.2e-178 628.6 401 77.6
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.1e-177 625.9 406 76.6
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 3.6e-177 625.2 399 75.2
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 3.6e-177 625.2 400 76.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 7.9e-177 624.0 400 76.2
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.0e-176 623.6 396 78.8
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 3.0e-176 622.1 399 77.2
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 3.0e-176 622.1 402 77.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 8.8e-176 620.5 401 75.3
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.5e-175 619.8 401 76.6
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.0e-175 619.4 388 78.9
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.7e-174 616.3 402 75.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.8e-174 615.5 401 74.6
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.7e-174 615.1 405 75.3
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 1.8e-173 612.8 401 75.6
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 9.1e-173 610.5 400 74.8
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 1.5e-172 609.8 403 74.4
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.5e-172 609.8 403 73.9
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.0e-172 609.4 403 73.4
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 2.0e-172 609.4 432 71.3
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.0e-172 609.4 403 73.2
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 5.9e-172 607.8 403 73.7
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 7.7e-172 607.4 401 75.6
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.0e-171 607.1 366 80.9
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 2.2e-171 605.9 419 70.6
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 6.5e-171 604.4 403 73.0
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.1e-170 603.6 403 74.2
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.4e-170 603.2 401 73.3
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.9e-170 602.8 402 73.1
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 3.2e-170 602.1 401 74.6
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 7.2e-170 600.9 402 72.9
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 7.2e-170 600.9 402 72.9
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 7.2e-170 600.9 496 62.9
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.6e-169 599.7 401 73.1
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 4.7e-169 598.2 401 72.8
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 7.9e-169 597.4 381 75.3
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 7.9e-169 597.4 401 72.6
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-168 596.7 402 72.4
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-168 596.7 402 72.6
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.8e-168 596.3 400 72.8
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 2.3e-168 595.9 381 75.1
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 3.0e-168 595.5 382 75.1
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 5.1e-168 594.7 401 72.6
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 8.8e-168 594.0 400 72.2
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-167 593.6 382 75.1
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 2.0e-167 592.8 401 72.3
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 2.0e-167 592.8 400 72.2
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 7.4e-167 590.9 392 74.0
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.2e-166 589.3 443 67.0
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.1e-165 587.0 400 74.5
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.1e-165 585.1 442 67.2
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.0e-165 584.3 553 57.7
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.2e-164 583.6 419 70.2
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 2.0e-164 582.8 417 70.7
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 2.0e-164 582.8 395 72.7
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 3.5e-164 582.0 349 79.9
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.7e-161 571.6 452 66.6
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 8.0e-161 570.9 399 71.4
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.3e-159 565.5 353 77.9
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-157 559.7 402 69.9
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.2e-148 530.4 327 80.4
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.7e-142 510.0 311 79.4
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 2.7e-140 502.7 315 79.7
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.2e-135 487.3 292 80.5
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.4e-133 479.6 351 70.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.3e-120 436.4 347 67.1
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 5.2e-120 435.3 351 60.7
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.7e-118 430.3 364 56.9
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 3.0e-115 419.5 342 60.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 4.7e-113 412.1 246 82.1
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 7.1e-109 398.3 340 56.2
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.0e-99 367.9 232 79.3
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.1e-96 357.8 349 51.3
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 4.2e-85 319.3 284 53.5
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.2e-84 317.8 226 71.2
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.9e-74 283.9 334 44.0
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 6.1e-68 262.3 364 39.3
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 3.2e-61 240.0 228 60.1
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 9.4e-61 238.4 335 42.1
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 2.1e-60 237.3 205 63.4
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.3e-57 225.7 172 71.5
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 3.8e-54 216.5 273 48.4
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.6e-44 183.3 98 91.8
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 8.3e-33 145.6 80 88.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.4e-32 144.8 82 87.8
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.9e-29 134.4 132 56.8
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.3e-27 127.5 79 77.2
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 8.9e-19 99.0 104 47.1
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 2.6e-18 97.4 75 64.0
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.4e-16 90.9 65 61.5
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.4e-10 70.5 53 62.3
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 9.2e-08 62.4 46 71.7
Actinidia30121 Actinidia chinensis HOM05D000834 ORTHO05D056792 4.6e-07 60.1 40 62.5
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.0e-06 58.9 36 72.2
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 1.7e-06 58.2 32 78.1


User provided reference genes

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