Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 3.8e-114 414.8 209 100.0
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 4.2e-113 411.4 209 99.0
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.8e-98 361.7 213 86.4
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.6e-96 355.1 214 86.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 8.0e-96 354.0 215 84.7
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.8e-95 352.8 212 84.0
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.3e-95 352.4 210 82.9
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 2.6e-94 349.0 209 84.7
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.3e-93 346.7 213 83.1
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.8e-93 345.5 207 85.5
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 6.3e-93 344.4 216 84.7
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 6.3e-93 344.4 212 82.5
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.1e-92 343.6 209 85.2
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.8e-92 342.8 214 82.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.1e-92 341.7 209 84.7
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 5.3e-92 341.3 213 83.1
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.0e-92 340.9 209 85.2
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.2e-91 340.1 212 81.1
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.6e-91 339.7 208 83.7
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.0e-91 339.3 211 84.4
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.7e-91 339.0 209 81.8
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.5e-91 338.2 215 81.9
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 7.7e-91 337.4 212 82.5
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.0e-90 337.0 214 80.8
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.3e-90 336.7 212 83.0
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.7e-90 336.3 212 81.6
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.9e-90 335.5 214 79.4
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.0e-90 334.7 212 83.0
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 8.5e-90 334.0 212 81.6
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 8.5e-90 334.0 207 82.1
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.1e-89 333.6 212 79.2
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.1e-89 333.6 212 82.1
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-89 333.6 212 82.5
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.5e-89 333.2 211 82.5
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.5e-89 333.2 213 82.2
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 2.5e-89 332.4 210 81.4
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 3.2e-89 332.0 211 82.5
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.2e-89 331.6 213 81.7
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 4.2e-89 331.6 213 78.9
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 4.2e-89 331.6 213 81.7
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 5.5e-89 331.3 209 78.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 7.2e-89 330.9 213 78.9
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 9.4e-89 330.5 220 79.1
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.6e-88 329.7 214 79.9
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 2.1e-88 329.3 216 79.6
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.6e-88 328.6 212 81.6
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 3.6e-88 328.6 210 80.5
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 6.1e-88 327.8 212 80.2
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.1e-88 327.8 212 80.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.0e-88 327.4 212 80.2
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.0e-88 327.4 212 80.2
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 8.0e-88 327.4 210 81.0
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.8e-87 326.2 214 77.6
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.0e-87 325.5 209 80.9
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 3.0e-87 325.5 210 80.5
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 4.0e-87 325.1 214 80.4
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 4.0e-87 325.1 212 79.7
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 5.2e-87 324.7 214 78.0
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.8e-87 324.3 212 79.7
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 6.8e-87 324.3 209 79.9
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 8.8e-87 323.9 209 78.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 8.8e-87 323.9 212 79.2
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 8.8e-87 323.9 212 80.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.2e-86 323.6 214 79.0
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.2e-86 323.6 210 79.5
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.5e-86 323.2 213 81.7
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 3.4e-86 322.0 210 79.5
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.5e-86 320.9 217 80.2
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.5e-86 320.9 217 80.2
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 7.5e-86 320.9 214 79.9
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.5e-86 320.9 215 79.5
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 7.5e-86 320.9 215 80.5
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 7.5e-86 320.9 208 78.4
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.2e-85 319.3 214 78.0
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 3.7e-85 318.5 209 79.9
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.8e-85 318.2 210 80.5
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 6.3e-85 317.8 209 79.4
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 8.3e-85 317.4 223 77.1
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-84 317.0 215 76.7
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.8e-84 316.2 211 78.7
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.4e-84 315.8 214 77.6
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 2.4e-84 315.8 213 77.9
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 3.1e-84 315.5 209 75.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.1e-84 315.5 193 83.9
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 7.0e-84 314.3 212 78.8
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.1e-84 313.9 210 78.6
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-83 313.5 201 81.1
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.2e-83 313.5 210 79.0
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.0e-83 312.8 209 77.5
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 4.5e-83 311.6 225 76.4
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.7e-83 310.8 209 78.5
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.3e-82 310.1 211 78.2
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.3e-82 310.1 210 78.1
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.5e-81 305.8 206 82.0
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.2e-81 305.1 203 80.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.2e-81 305.1 203 80.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.5e-81 304.7 206 81.6
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.2e-80 303.5 210 76.2
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.7e-80 301.6 208 75.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 4.7e-80 301.6 212 75.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 8.0e-80 300.8 189 81.0
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 8.0e-80 300.8 209 75.1
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.0e-79 300.4 209 75.6
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 4.0e-79 298.5 213 74.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.2e-79 298.1 199 76.4
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.2e-78 297.0 212 72.6
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.5e-78 296.6 211 72.5
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.0e-78 296.2 212 73.1
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.0e-78 296.2 213 72.8
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 3.4e-78 295.4 212 72.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.4e-78 295.0 211 72.0
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 4.4e-78 295.0 208 74.0
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 4.4e-78 295.0 210 73.8
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 5.7e-78 294.7 209 72.7
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 7.5e-78 294.3 210 74.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 9.8e-78 293.9 210 74.8
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.3e-77 293.5 209 73.7
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.2e-77 292.7 185 81.6
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.2e-77 292.7 210 73.8
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.2e-77 292.7 210 74.3
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 8.3e-77 290.8 217 74.2
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.1e-76 290.4 213 70.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.8e-76 289.7 161 87.0
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.0e-75 286.2 213 73.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 7.8e-75 284.3 211 72.5
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.7e-74 283.1 208 74.0
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.9e-74 282.3 209 74.2
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.9e-74 282.3 209 74.2
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.5e-73 280.0 208 69.7
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 3.3e-73 278.9 214 71.5
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.2e-72 276.9 209 69.4
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.8e-71 273.1 212 68.9
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 3.1e-71 272.3 146 87.0
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 8.9e-71 270.8 166 80.1
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.3e-69 266.9 147 85.7
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.9e-69 265.8 183 74.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.4e-68 262.7 150 84.0
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 3.2e-68 262.3 213 65.3
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.4e-68 261.5 162 79.6
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.0e-67 259.6 158 79.7
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.0e-67 259.6 198 69.2
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.6e-66 254.2 206 65.5
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 6.4e-61 238.0 145 82.8
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 4.6e-59 231.9 142 77.5
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 8.6e-58 227.6 204 59.3
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.1e-57 227.3 214 64.0
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 9.5e-57 224.2 211 61.1
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 8.1e-56 221.1 154 70.1
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.1e-47 192.6 208 55.8
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.6e-42 174.9 92 90.2
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.6e-33 145.2 75 93.3
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 4.2e-20 102.4 105 57.1
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 2.1e-19 100.1 105 58.1
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 7.9e-19 98.2 105 57.1
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 1.3e-10 70.9 73 54.8
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 3.4e-06 56.2 79 46.8
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 5.9e-06 55.5 93 39.8


User provided reference genes

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