Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 2.8e-218 761.5 359 100.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.9e-162 575.5 361 70.9
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 7.9e-160 567.4 358 70.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 7.9e-160 567.4 360 71.1
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 8.7e-159 563.9 355 71.5
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 2.8e-157 558.9 358 70.9
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.6e-155 552.4 361 69.0
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 5.8e-155 551.2 346 71.4
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 4.9e-154 548.1 356 68.3
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 4.2e-153 545.0 365 68.2
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 5.5e-153 544.7 357 68.9
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.7e-152 542.3 359 69.6
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 7.9e-152 540.8 363 69.4
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 7.9e-152 540.8 359 68.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 7.9e-152 540.8 346 69.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.0e-151 540.4 352 68.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.3e-151 539.3 359 69.4
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.0e-151 538.9 362 67.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.7e-151 537.7 359 69.4
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.7e-151 537.3 356 67.1
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.7e-151 537.3 356 67.1
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 8.7e-151 537.3 353 67.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 4.3e-150 535.0 367 65.7
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 4.3e-150 535.0 361 66.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.7e-150 533.9 356 67.1
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.3e-149 533.5 354 65.3
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.3e-149 533.5 362 67.1
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-148 530.4 357 66.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.8e-148 529.6 353 66.6
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.4e-148 529.3 345 67.0
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 5.3e-148 528.1 361 67.0
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 3.4e-147 525.4 362 66.6
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.0e-146 523.9 357 65.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.3e-146 523.5 354 65.0
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.7e-146 523.1 352 64.8
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.2e-146 522.7 353 65.4
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.9e-146 522.3 360 67.2
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.0e-146 521.5 362 65.7
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 5.0e-146 521.5 357 65.8
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 6.5e-146 521.2 360 63.3
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 6.5e-146 521.2 360 65.0
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 8.5e-146 520.8 354 65.0
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 8.5e-146 520.8 353 64.9
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.4e-145 520.0 339 67.0
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.4e-145 520.0 307 72.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.9e-145 519.6 360 64.2
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 9.4e-145 517.3 361 65.7
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 2.1e-144 516.2 361 64.5
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.6e-144 515.4 359 64.9
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 7.9e-144 514.2 361 64.5
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.0e-143 513.8 361 64.8
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 3.9e-143 511.9 363 64.7
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.9e-143 511.9 349 63.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.1e-142 510.4 355 63.7
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.1e-142 510.4 355 65.6
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.5e-142 510.0 366 64.5
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 2.0e-142 509.6 361 65.4
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.5e-142 509.2 355 65.1
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 3.3e-142 508.8 361 64.0
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 4.3e-142 508.4 355 63.9
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.3e-142 508.4 358 65.1
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.3e-142 508.4 355 64.8
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 5.7e-142 508.1 365 64.9
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 5.7e-142 508.1 360 64.4
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 7.4e-142 507.7 366 63.7
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 9.7e-142 507.3 361 64.8
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.7e-141 506.5 355 64.5
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.2e-141 506.1 355 63.7
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.2e-141 506.1 365 64.1
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 2.8e-141 505.8 358 63.4
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.8e-141 505.8 357 63.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 4.8e-141 505.0 357 63.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 8.2e-141 504.2 354 62.7
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.4e-140 503.4 368 63.0
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.4e-140 502.7 357 62.7
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.4e-140 502.7 354 63.8
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 3.1e-140 502.3 353 63.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.9e-140 501.1 355 64.5
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.0e-139 499.6 353 63.2
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.0e-139 499.6 353 63.2
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.0e-139 499.6 363 62.5
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.4e-139 498.8 344 64.5
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.4e-139 498.8 319 69.6
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 5.9e-139 498.0 319 69.6
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-139 497.7 318 69.5
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-139 497.7 319 69.6
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.9e-138 495.7 310 71.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 6.5e-138 494.6 447 53.0
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 8.5e-138 494.2 355 65.6
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 8.5e-138 494.2 345 64.3
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.9e-137 493.0 358 61.7
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 7.2e-137 491.1 404 58.9
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 6.3e-133 478.0 357 60.5
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 6.3e-133 478.0 352 62.2
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 8.2e-133 477.6 444 52.0
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.8e-132 476.5 360 60.3
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 2.0e-131 473.0 348 64.4
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 3.8e-130 468.8 341 61.9
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.1e-128 463.0 353 58.9
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 4.7e-128 461.8 335 62.4
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.0e-127 459.1 361 59.0
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 3.0e-127 459.1 357 58.5
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.6e-123 446.8 361 60.1
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.0e-122 444.1 361 59.8
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.7e-122 443.4 354 60.2
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.9e-121 439.9 367 58.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.3e-119 433.0 314 63.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 6.7e-119 431.4 359 57.1
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-117 426.8 275 69.5
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.7e-117 425.6 275 69.1
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 6.3e-117 424.9 267 71.2
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 8.3e-117 424.5 345 58.3
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 3.1e-116 422.5 275 68.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 4.0e-111 405.6 268 66.8
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.9e-106 389.4 339 54.6
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 9.5e-105 384.4 263 64.3
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.0e-103 379.0 315 59.0
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 2.0e-99 366.7 337 50.7
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.3e-98 363.2 224 70.5
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.7e-96 355.5 246 65.0
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.3e-93 347.4 230 67.8
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 4.6e-91 339.0 361 46.0
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 7.3e-89 331.6 203 70.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.4e-86 322.8 261 58.6
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.8e-86 321.2 327 50.2
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.9e-84 317.0 225 62.2
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 9.2e-84 314.7 361 45.2
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 4.6e-83 312.4 362 43.9
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.0e-82 311.2 212 63.2
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.7e-82 310.5 357 44.3
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.5e-78 297.4 363 44.9
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.1e-76 291.2 184 72.8
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.0e-74 283.1 201 62.2
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 5.2e-71 272.3 194 64.4
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.0e-70 270.4 207 62.3
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 5.6e-57 225.7 238 45.8
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.1e-56 221.9 155 65.8
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 5.4e-52 209.1 158 62.0
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 9.6e-41 171.8 280 37.5
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 6.9e-39 165.6 227 44.1
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.5e-28 129.4 105 57.1
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.6e-27 127.9 107 55.1
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.3e-25 119.8 99 58.6
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 4.5e-22 109.8 98 50.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.7e-21 107.8 92 52.2
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 5.9e-14 82.8 178 28.1
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 9.1e-07 58.9 96 35.4


User provided reference genes

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