Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 4.0e-132 474.9 268 100.0
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 7.8e-120 434.1 268 92.9
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 2.9e-66 256.1 270 53.7
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.9e-62 243.4 269 50.6
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.9e-62 243.4 253 63.2
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 2.8e-61 239.6 252 57.9
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 2.8e-61 239.6 262 56.1
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.8e-61 239.6 254 52.4
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 6.3e-61 238.4 246 53.7
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 2.4e-60 236.5 263 48.7
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 2.4e-60 236.5 272 48.9
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 4.1e-60 235.7 264 50.8
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 9.0e-60 234.6 263 47.5
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.2e-59 234.2 259 50.6
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.5e-59 233.8 260 48.5
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.5e-59 233.8 260 48.5
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 3.4e-59 232.6 254 50.8
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 3.4e-59 232.6 265 54.7
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 5.9e-59 231.9 265 51.3
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 7.7e-59 231.5 263 48.3
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 7.7e-59 231.5 261 50.2
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 1.0e-58 231.1 259 50.2
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.3e-58 230.7 249 51.0
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 1.7e-58 230.3 265 49.8
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.7e-58 230.3 255 52.2
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 1.7e-58 230.3 256 49.2
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.7e-58 230.3 265 50.6
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 2.2e-58 229.9 206 57.3
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 2.9e-58 229.6 243 51.4
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.8e-58 229.2 244 49.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.0e-58 228.8 259 50.2
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 6.5e-58 228.4 247 51.0
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 8.5e-58 228.0 264 44.7
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 8.5e-58 228.0 253 57.3
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.1e-57 227.6 262 48.5
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 1.1e-57 227.6 261 50.2
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 1.1e-57 227.6 247 50.2
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.4e-57 227.3 263 50.6
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 1.9e-57 226.9 264 55.7
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 3.2e-57 226.1 267 48.3
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 3.2e-57 226.1 261 52.1
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 3.2e-57 226.1 262 49.2
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 3.2e-57 226.1 265 51.3
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 4.2e-57 225.7 264 48.9
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 7.2e-57 224.9 263 48.3
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 7.2e-57 224.9 261 48.3
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 9.4e-57 224.6 262 51.1
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-56 224.2 263 54.0
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 1.2e-56 224.2 263 46.8
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 2.7e-56 223.0 266 52.6
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 3.6e-56 222.6 267 47.9
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 3.6e-56 222.6 260 47.3
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 3.6e-56 222.6 263 49.0
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 3.6e-56 222.6 251 50.2
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 4.6e-56 222.2 254 50.0
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.9e-56 221.5 263 49.0
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.0e-55 221.1 244 50.4
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.8e-55 220.3 256 58.6
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 2.3e-55 219.9 261 48.7
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 5.1e-55 218.8 260 46.5
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 5.1e-55 218.8 203 57.1
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 8.8e-55 218.0 268 48.5
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.1e-54 217.6 263 48.7
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 1.5e-54 217.2 213 52.6
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.0e-54 216.9 263 49.8
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.5e-54 216.5 263 44.5
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 3.3e-54 216.1 230 52.6
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 5.7e-54 215.3 267 55.1
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.4e-54 214.9 263 49.8
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 9.7e-54 214.5 200 55.5
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 1.3e-53 214.2 240 57.5
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 3.7e-53 212.6 255 50.6
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 3.7e-53 212.6 207 57.0
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 4.8e-53 212.2 240 54.2
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 6.3e-53 211.8 255 48.2
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 8.2e-53 211.5 204 53.9
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-52 210.7 263 48.7
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 1.8e-52 210.3 257 46.3
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.8e-52 210.3 241 49.0
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 4.1e-52 209.1 251 55.0
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.7e-50 203.8 266 46.6
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.2e-50 203.4 271 47.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 5.0e-50 202.2 224 49.6
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 5.0e-50 202.2 237 48.1
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.1e-48 196.8 135 68.1
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 7.4e-46 188.3 264 44.3
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 9.7e-46 188.0 263 44.5
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.4e-44 184.1 208 47.1
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.5e-43 180.6 212 50.0
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 2.5e-41 173.3 254 42.9
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.6e-40 170.6 269 43.9
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 6.1e-40 168.7 254 41.7
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 8.0e-40 168.3 203 44.3
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 5.7e-38 162.2 247 40.9
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.3e-37 161.0 128 64.8
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 3.7e-37 159.5 201 42.3
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 7.0e-36 155.2 257 40.5
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 4.5e-35 152.5 143 55.2
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 4.5e-35 152.5 260 38.5
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 3.4e-22 109.8 183 40.4
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 3.4e-22 109.8 183 40.4
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 3.4e-22 109.8 183 40.4
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 3.5e-19 99.8 228 39.5
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 3.5e-19 99.8 228 39.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.1e-17 94.7 127 44.9
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.5e-17 94.4 145 37.9
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 3.3e-17 93.2 167 45.5
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.2e-16 91.3 140 37.1
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.2e-16 91.3 143 49.0
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.1e-16 90.5 171 36.3
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 2.1e-16 90.5 166 48.8
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 3.6e-16 89.7 155 45.2
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 6.1e-16 89.0 155 46.5
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 1.8e-15 87.4 140 37.1
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.8e-15 87.4 140 37.1
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 8.9e-15 85.1 140 42.1
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 8.9e-15 85.1 144 45.8
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 2.0e-14 84.0 162 37.7
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 4.4e-14 82.8 141 39.7
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.7e-13 79.7 151 35.8
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 6.3e-13 79.0 134 42.5
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 8.3e-13 78.6 99 42.4
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 3.9e-10 69.7 64 54.7
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 4.0e-07 59.7 146 33.6


User provided reference genes

Program Settings