Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 5.2e-196 687.6 356 100.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.4e-156 556.6 308 93.8
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-154 550.1 336 87.5
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 9.3e-153 543.9 307 92.5
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.0e-110 403.3 326 63.5
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 2.5e-105 386.3 292 72.6
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 6.3e-101 371.7 326 59.5
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 4.5e-99 365.5 338 57.1
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 7.7e-99 364.8 354 55.1
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.2e-97 359.0 323 59.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 8.0e-96 354.8 310 58.4
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 8.0e-96 354.8 319 58.3
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.5e-94 350.5 324 56.2
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 5.7e-94 348.6 322 52.8
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.3e-93 347.4 307 58.3
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 2.8e-93 346.3 312 56.7
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 4.8e-93 345.5 322 53.4
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.8e-92 343.6 321 55.5
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 5.3e-92 342.0 326 55.2
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.2e-91 340.9 324 54.0
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.7e-91 339.7 326 54.9
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 7.7e-91 338.2 321 53.6
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.0e-90 337.8 315 55.9
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.7e-90 337.0 299 56.2
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.8e-90 335.9 328 54.9
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 3.8e-90 335.9 321 54.5
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 5.0e-90 335.5 325 53.8
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 1.1e-89 334.3 325 53.2
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 1.5e-89 334.0 319 53.3
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.5e-89 334.0 322 53.4
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 1.9e-89 333.6 316 55.7
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 7.2e-89 331.6 321 55.1
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 3.6e-88 329.3 317 53.0
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 8.0e-88 328.2 321 55.1
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.4e-87 327.4 321 53.9
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 4.0e-87 325.9 301 57.1
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.2e-87 325.5 335 51.3
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.0e-86 323.6 303 55.8
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.0e-86 323.6 309 55.0
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 4.4e-86 322.4 303 55.8
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.3e-85 320.9 310 54.8
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.7e-85 320.5 308 54.5
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 2.8e-85 319.7 310 52.9
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 2.8e-85 319.7 301 53.8
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 8.3e-85 318.2 304 54.9
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 9.1e-84 314.7 331 51.4
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.6e-83 313.9 326 51.5
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.5e-83 312.8 346 48.8
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 7.7e-83 311.6 300 55.0
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.7e-82 310.5 346 48.8
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 6.5e-82 308.5 304 50.0
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.1e-81 307.8 307 53.4
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.5e-81 307.4 300 56.0
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.5e-81 306.6 303 56.1
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 4.2e-81 305.8 329 50.2
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 9.4e-81 304.7 304 52.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 9.4e-81 304.7 304 52.3
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.2e-80 304.3 319 48.0
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.2e-80 304.3 320 51.6
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 1.2e-80 304.3 328 49.7
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.6e-80 303.9 317 52.7
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.7e-80 303.1 282 56.7
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 2.7e-80 303.1 278 55.8
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 8.0e-80 301.6 246 61.0
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 8.0e-80 301.6 301 51.5
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 2.6e-78 296.6 301 54.2
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 5.7e-78 295.4 300 49.7
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.7e-77 293.9 299 53.2
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 3.7e-77 292.7 303 51.8
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.1e-76 291.2 303 45.9
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.8e-76 290.4 316 46.8
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.0e-75 287.0 319 49.5
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.9e-74 283.1 306 50.7
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 2.9e-74 283.1 303 49.8
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.1e-73 281.2 314 51.9
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.5e-73 280.8 301 50.8
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 2.5e-73 280.0 301 48.5
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.3e-73 278.5 301 50.5
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 2.8e-72 276.6 236 61.0
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.6e-72 276.2 313 48.6
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.6e-72 276.2 310 51.3
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.6e-72 276.2 301 49.8
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.7e-72 275.8 301 49.8
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-71 274.6 301 49.5
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 6.8e-71 271.9 307 48.2
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 6.8e-71 271.9 293 50.5
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 7.8e-67 258.5 299 44.8
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.8e-64 250.0 264 51.1
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.7e-61 239.6 324 44.8
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 3.9e-58 229.6 295 44.1
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 5.0e-58 229.2 308 42.5
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 8.6e-58 228.4 344 41.0
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 2.5e-57 226.9 325 41.5
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 2.5e-57 226.9 325 41.5
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 5.6e-57 225.7 325 41.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 7.3e-57 225.3 326 40.8
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 9.5e-57 224.9 316 39.6
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.6e-56 224.2 315 42.5
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.6e-56 224.2 322 41.6
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.8e-56 223.4 297 42.1
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.7e-56 222.6 329 41.6
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 4.7e-56 222.6 328 41.8
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.1e-55 221.5 301 40.9
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 5.2e-55 219.2 327 40.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.8e-54 214.9 275 46.2
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 1.1e-52 211.5 289 40.8
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.6e-51 207.6 282 45.7
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.2e-48 198.0 280 37.9
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.8e-48 196.8 320 38.4
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 4.7e-48 196.1 292 36.3
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.2e-46 191.4 353 36.0
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 3.7e-45 186.4 184 56.0
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.5e-43 179.9 171 51.5
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.5e-41 174.5 273 39.2
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 7.3e-41 172.2 312 33.7
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.2e-40 171.4 285 38.2
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.4e-39 167.9 152 57.2
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 5.4e-36 156.0 184 44.0
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.1e-31 141.7 254 33.5
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 2.6e-30 137.1 110 58.2
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.5e-30 136.3 98 63.3
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 5.4e-28 129.4 168 38.1
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 9.3e-28 128.6 119 52.9
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 2.1e-24 117.5 258 30.6
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.2e-24 115.9 81 65.4
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.1e-23 113.6 139 47.5
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 4.5e-22 109.8 187 39.0
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.3e-21 108.2 118 50.0
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.9e-20 104.4 92 57.6
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.1e-20 102.4 145 42.8
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-18 98.6 123 42.3
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.9e-17 94.4 104 44.2
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 3.3e-17 93.6 208 30.3
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 8.1e-16 89.0 205 31.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 5.8e-14 82.8 76 57.9
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 2.5e-12 77.4 71 57.7
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.2e-12 76.6 70 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.6e-11 74.7 149 32.2
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 2.7e-11 73.9 49 71.4
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.9e-09 67.8 165 35.2
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 7.4e-09 65.9 118 31.4
PSO339G1213 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-08 65.1 37 89.2
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 6.3e-08 62.8 49 57.1
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 3.1e-07 60.5 37 83.8


User provided reference genes

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