Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.2e-172 609.0 336 100.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 5.8e-165 584.3 342 90.1
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.3e-127 460.3 287 77.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 9.4e-123 444.1 288 74.3
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 4.1e-118 428.7 287 73.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.2e-117 427.2 287 72.8
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.6e-117 426.8 288 72.2
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 8.5e-116 421.0 287 71.8
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.1e-115 420.6 287 71.1
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 5.5e-115 418.3 288 71.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 5.5e-115 418.3 287 70.0
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 5.5e-115 418.3 286 72.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 9.4e-115 417.5 287 70.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.1e-114 416.4 287 71.1
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.0e-113 414.1 287 70.4
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.8e-113 413.3 287 70.0
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.8e-113 413.3 287 70.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.3e-113 412.9 287 70.0
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.3e-113 412.9 320 64.1
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.3e-113 412.9 287 69.0
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.2e-113 411.8 287 69.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 5.2e-113 411.8 287 70.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.8e-113 411.0 287 68.6
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 8.8e-113 411.0 287 68.6
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 8.8e-113 411.0 287 68.6
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 8.8e-113 411.0 291 67.7
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 8.8e-113 411.0 286 69.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.2e-112 410.6 287 69.3
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.0e-112 409.8 288 69.8
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.0e-112 409.8 287 69.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 2.6e-112 409.5 287 69.0
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 3.4e-112 409.1 287 69.0
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 4.4e-112 408.7 286 70.3
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 4.4e-112 408.7 287 67.6
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 4.4e-112 408.7 288 67.7
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 7.5e-112 407.9 287 67.9
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 9.8e-112 407.5 288 69.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 9.8e-112 407.5 287 67.6
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-111 406.8 288 69.1
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.7e-111 406.8 288 69.1
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.7e-111 406.8 287 68.3
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-111 406.0 288 69.1
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.7e-111 405.6 288 69.4
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 6.3e-111 404.8 288 68.1
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 1.1e-110 404.1 287 67.9
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.4e-110 403.7 289 66.8
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.4e-110 403.7 288 67.7
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.4e-110 402.9 288 67.0
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 3.1e-110 402.5 286 68.5
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 3.1e-110 402.5 287 67.2
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 4.1e-110 402.1 287 67.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 4.1e-110 402.1 287 67.6
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 5.4e-110 401.7 287 67.6
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 7.0e-110 401.4 287 66.2
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 7.0e-110 401.4 287 67.6
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.2e-109 400.6 289 66.1
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.2e-109 400.6 289 66.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.6e-109 400.2 288 68.8
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.6e-109 400.2 288 68.8
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.6e-109 400.2 308 65.6
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.7e-109 399.4 292 66.1
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 3.5e-109 399.1 289 66.8
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 4.5e-109 398.7 288 67.7
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.5e-109 398.7 287 68.6
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 5.9e-109 398.3 336 62.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 5.9e-109 398.3 287 67.2
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 7.7e-109 397.9 287 68.6
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-108 397.5 286 68.2
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.0e-108 397.5 287 67.2
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.3e-108 397.1 288 67.7
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.3e-108 397.1 286 68.2
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.7e-108 396.7 289 65.4
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.7e-108 396.7 289 65.4
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.3e-108 396.4 288 67.0
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.0e-108 395.2 287 66.9
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 5.0e-108 395.2 292 65.8
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 6.6e-108 394.8 287 65.9
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 8.6e-108 394.4 288 67.4
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.1e-107 394.0 324 62.0
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.1e-107 394.0 288 67.0
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.5e-107 393.7 287 67.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-107 393.7 287 66.2
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.5e-107 392.9 287 65.9
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 4.2e-107 392.1 288 64.2
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 5.5e-107 391.7 289 67.5
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 2.8e-106 389.4 291 66.7
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.0e-105 387.5 288 64.2
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.4e-105 387.1 290 66.2
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.3e-105 386.3 287 63.8
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 3.0e-105 386.0 290 65.9
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.8e-105 384.8 286 65.0
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.8e-105 384.8 286 65.0
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.5e-104 383.6 326 59.2
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-104 383.3 286 64.3
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.4e-104 382.5 289 63.7
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 9.2e-102 374.4 287 64.1
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.7e-101 372.9 321 60.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 5.9e-101 371.7 295 62.7
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-100 370.9 286 65.4
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.3e-100 370.5 284 65.5
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.3e-100 370.5 284 65.5
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.0e-100 368.6 284 64.8
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 8.6e-100 367.9 288 63.9
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.6e-98 363.6 269 65.1
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.1e-98 363.2 338 55.0
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.6e-98 362.5 287 62.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.0e-97 360.9 293 63.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.8e-97 360.1 289 58.8
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 3.5e-93 345.9 251 64.5
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 3.5e-93 345.9 293 59.4
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.2e-90 337.4 281 58.0
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.0e-88 330.1 300 55.7
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.1e-86 324.3 272 61.8
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.4e-86 323.2 287 58.2
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 7.0e-86 321.6 287 55.7
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.2e-80 304.3 286 56.3
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.7e-79 299.3 245 58.4
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.9e-75 287.0 210 68.1
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-75 286.6 296 54.7
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.2e-74 284.3 243 58.8
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 5.8e-72 275.4 286 46.5
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.9e-71 273.1 290 47.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 2.1e-69 266.9 287 43.6
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.3e-68 263.5 286 44.4
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-66 257.7 198 64.1
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 6.2e-66 255.4 380 38.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.4e-62 244.2 254 46.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.7e-61 240.0 161 70.8
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-60 238.0 200 61.5
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.3e-60 236.9 256 50.0
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 4.3e-51 206.1 236 48.3
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 3.8e-47 193.0 164 56.7
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 9.0e-41 171.8 279 35.5
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 3.4e-32 143.3 114 63.2
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.4e-32 143.3 84 78.6
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.6e-29 134.4 112 57.1
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 2.5e-27 127.1 96 63.5
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 9.1e-25 118.6 87 66.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 9.1e-25 118.6 87 66.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-24 117.9 73 75.3
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-22 111.7 68 76.5
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.2e-22 110.2 75 70.7
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 3.6e-21 106.7 104 51.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 6.7e-20 102.4 69 71.0
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.4e-19 99.0 176 35.8
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.3e-18 98.2 82 57.3
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.8e-17 94.4 82 53.7
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 5.0e-15 86.3 58 74.1
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-14 85.1 56 71.4
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.7e-13 80.5 84 48.8
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.7e-10 71.2 47 68.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.2e-10 68.9 64 56.2
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 3.5e-08 63.5 51 58.8


User provided reference genes

Program Settings