Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 7.1e-156 553.9 282 100.0
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 5.3e-151 537.7 284 97.9
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 4.8e-104 381.7 296 72.6
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.1e-103 380.6 284 72.5
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.5e-102 376.7 285 71.2
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.5e-102 375.6 285 71.9
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 4.5e-102 375.2 285 71.6
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.5e-102 375.2 285 71.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 7.7e-102 374.4 295 69.2
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 6.5e-101 371.3 288 72.2
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 8.5e-101 370.9 279 72.4
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.9e-100 369.8 280 71.1
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.2e-100 369.0 295 69.2
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 5.5e-100 368.2 281 72.6
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.5e-100 368.2 285 71.2
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.0e-98 364.0 223 83.0
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.4e-98 363.6 220 81.4
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.4e-98 363.6 224 81.2
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.1e-97 360.5 285 70.5
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.0e-97 359.8 245 74.7
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 2.0e-97 359.8 221 81.9
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 2.6e-97 359.4 223 82.5
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.7e-96 356.7 219 79.9
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.7e-96 356.7 214 83.6
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 2.2e-96 356.3 282 69.1
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 3.7e-96 355.5 240 76.7
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 6.3e-96 354.8 254 75.6
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 6.3e-96 354.8 224 81.7
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 6.3e-96 354.8 223 80.7
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.1e-95 354.0 219 83.1
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.1e-95 354.0 281 69.0
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.1e-95 354.0 214 84.1
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.4e-95 353.6 279 69.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.4e-95 353.6 223 81.6
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.4e-95 352.8 219 83.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 3.1e-95 352.4 221 78.7
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 7.0e-95 351.3 214 83.2
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.2e-94 350.5 254 73.6
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 1.6e-94 350.1 223 79.8
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 2.0e-94 349.7 223 79.8
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 3.5e-94 349.0 224 80.4
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 3.5e-94 349.0 275 68.0
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 7.7e-94 347.8 223 80.3
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 7.7e-94 347.8 223 80.3
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.3e-93 347.1 293 65.9
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.3e-93 347.1 211 83.4
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 3.8e-93 345.5 303 65.0
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 5.0e-93 345.1 219 79.9
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 6.5e-93 344.7 226 77.9
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 6.5e-93 344.7 214 81.3
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 8.5e-93 344.4 273 69.2
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.5e-92 343.6 278 68.3
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.5e-92 343.6 287 66.9
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.5e-92 342.8 214 80.8
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 3.2e-92 342.4 211 82.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 4.2e-92 342.0 281 68.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 4.2e-92 342.0 204 84.3
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 4.2e-92 342.0 213 80.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 5.5e-92 341.7 283 66.8
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 5.5e-92 341.7 197 86.8
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 7.2e-92 341.3 203 83.7
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 7.2e-92 341.3 241 73.9
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 7.2e-92 341.3 241 73.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 7.2e-92 341.3 239 75.3
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 9.4e-92 340.9 227 78.0
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.2e-91 340.5 285 68.8
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 1.2e-91 340.5 285 68.8
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.2e-91 340.5 220 80.5
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 1.6e-91 340.1 283 66.8
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 1.6e-91 340.1 283 66.8
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.6e-91 340.1 197 87.8
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.1e-91 339.7 214 79.9
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.7e-91 339.3 245 73.1
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 2.7e-91 339.3 284 67.3
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 2.7e-91 339.3 288 66.7
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 4.7e-91 338.6 282 68.4
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 4.7e-91 338.6 295 64.7
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 4.7e-91 338.6 240 74.2
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 6.1e-91 338.2 266 70.7
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 8.0e-91 337.8 238 74.4
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 8.0e-91 337.8 280 66.8
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 8.0e-91 337.8 214 79.9
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 8.0e-91 337.8 284 66.2
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.8e-90 336.7 284 68.7
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.3e-90 336.3 279 65.9
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.0e-90 335.5 279 65.6
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 8.8e-90 334.3 279 65.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.6e-89 332.8 213 79.8
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 5.7e-89 331.6 285 65.6
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 7.5e-89 331.3 219 76.3
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 2.2e-88 329.7 205 82.4
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 3.7e-88 328.9 291 64.6
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 3.7e-88 328.9 248 71.0
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.8e-88 328.6 249 69.1
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 4.8e-88 328.6 192 85.9
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 6.3e-88 328.2 195 84.6
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 6.3e-88 328.2 193 83.4
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.4e-87 327.0 287 65.5
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.8e-87 326.6 196 84.7
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 2.4e-87 326.2 237 73.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.6e-86 323.6 214 78.0
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.5e-86 322.0 284 63.7
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.0e-85 320.9 295 61.7
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.7e-85 320.1 214 77.6
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.9e-84 316.6 275 64.7
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.8e-82 307.8 210 74.3
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 7.5e-81 304.7 185 83.8
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.8e-80 302.8 205 77.1
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 2.8e-80 302.8 286 62.6
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.5e-78 295.4 264 63.6
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 7.7e-78 294.7 340 51.5
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.2e-75 287.3 212 70.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.2e-75 287.3 260 63.8
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.6e-75 287.0 274 60.6
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.2e-73 280.8 233 67.8
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 8.3e-72 274.6 157 87.9
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 7.0e-71 271.6 244 63.9
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.5e-68 263.8 174 77.6
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 3.1e-66 256.1 218 65.6
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 4.9e-64 248.8 151 84.8
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 7.0e-63 245.0 134 92.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.8e-62 241.5 160 73.8
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 4.3e-60 235.7 192 63.5
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 6.8e-58 228.4 221 58.4
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.5e-57 227.3 135 83.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 3.4e-57 226.1 191 68.1
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 5.8e-57 225.3 160 68.1
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 9.5e-52 208.0 199 60.3
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.1e-43 180.3 120 75.0
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 7.1e-39 165.2 104 83.7
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.0e-37 161.4 90 92.2
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.4e-34 150.2 226 45.6
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 5.3e-34 149.1 176 50.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.2e-32 143.7 161 50.9
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 7.9e-30 135.2 176 46.6
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 4.6e-22 109.4 78 70.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.0e-21 108.2 84 64.3
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.3e-20 102.8 78 65.4
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 6.5e-16 89.0 178 38.2
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 4.8e-11 72.8 84 47.6
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.1e-07 61.6 70 45.7


User provided reference genes

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