Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.1e-212 743.0 370 100.0
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 4.4e-206 721.1 370 96.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 3.1e-159 565.5 370 75.7
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.6e-144 516.5 370 69.2
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.7e-141 506.5 372 66.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.6e-139 500.0 371 66.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.8e-138 496.5 370 63.5
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.3e-136 490.3 373 65.1
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.3e-136 490.3 373 64.9
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.7e-136 488.8 371 65.2
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.7e-136 488.8 370 64.1
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 6.9e-135 484.6 370 63.2
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.5e-134 483.4 373 63.0
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 2.0e-134 483.0 370 63.0
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 5.9e-134 481.5 370 63.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 7.7e-134 481.1 370 63.2
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.8e-133 478.8 370 62.4
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 5.0e-133 478.4 375 63.5
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 8.5e-133 477.6 370 61.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.2e-132 475.7 373 63.5
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 4.2e-132 475.3 370 62.7
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 4.6e-131 471.9 370 61.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.0e-130 470.7 375 60.5
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.8e-130 469.9 370 61.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 3.9e-130 468.8 370 61.4
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 3.9e-130 468.8 382 62.8
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 5.1e-130 468.4 373 63.8
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.1e-129 467.2 383 60.1
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.5e-129 466.8 370 61.9
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.0e-129 466.5 370 60.3
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 7.4e-129 464.5 374 63.1
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 9.7e-129 464.2 374 62.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.8e-128 461.8 372 60.5
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 4.8e-128 461.8 372 61.3
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 4.1e-127 458.8 375 61.3
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.4e-126 455.7 377 61.3
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.7e-125 453.4 376 60.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.2e-125 453.0 372 59.9
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.2e-125 453.0 379 61.5
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.9e-125 452.6 376 60.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.1e-124 450.7 376 59.8
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.9e-124 449.9 350 62.0
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 3.2e-124 449.1 384 58.6
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 5.5e-124 448.4 390 57.9
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 7.2e-124 448.0 380 58.4
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 9.4e-124 447.6 375 59.7
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.2e-123 447.2 377 60.5
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.7e-123 446.0 364 61.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 6.1e-123 444.9 372 60.5
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.4e-122 443.7 376 59.3
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 3.9e-122 442.2 374 60.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 6.7e-122 441.4 375 59.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 6.7e-122 441.4 374 59.9
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-121 440.7 379 56.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-121 439.9 379 56.5
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.2e-120 436.4 373 59.2
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-120 436.0 379 56.2
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.7e-120 435.6 370 60.0
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.7e-120 435.6 373 59.2
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.7e-120 435.6 378 59.0
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 4.8e-120 435.3 378 60.1
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.8e-120 435.3 373 59.0
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.1e-119 434.1 373 59.5
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.1e-119 434.1 373 59.5
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.8e-119 433.3 373 59.0
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.4e-119 433.0 375 59.5
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 3.1e-119 432.6 374 58.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 7.0e-119 431.4 376 57.7
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.6e-118 429.5 381 58.5
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.7e-118 427.9 373 58.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.3e-117 427.2 372 56.2
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.3e-117 427.2 377 59.9
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.2e-117 426.4 375 57.1
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.9e-117 426.0 375 57.3
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.9e-117 426.0 375 61.1
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.8e-117 425.6 371 59.8
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.0e-117 425.2 367 59.1
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 6.5e-117 424.9 372 58.3
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.1e-116 424.1 372 57.5
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.5e-116 423.7 373 57.4
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.2e-116 422.5 375 58.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 9.4e-116 421.0 375 56.8
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.7e-115 419.5 372 56.2
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.8e-114 416.8 371 57.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 3.0e-114 416.0 359 57.7
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.5e-113 413.7 373 55.8
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 5.7e-113 411.8 378 54.8
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 9.7e-113 411.0 372 55.4
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.3e-112 410.6 377 54.9
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.3e-112 410.6 377 54.9
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.3e-112 410.6 377 54.9
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.3e-112 410.6 376 55.9
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-111 407.5 376 55.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.4e-111 407.1 372 54.6
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-110 403.7 376 55.3
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 4.5e-110 402.1 381 55.4
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.7e-109 400.2 376 54.8
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.8e-109 399.1 369 55.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.2e-104 383.3 362 55.0
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.2e-100 369.0 374 49.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-97 360.1 361 49.3
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.4e-97 359.4 374 49.7
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 5.7e-97 358.6 345 54.2
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.5e-97 358.2 345 54.2
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.7e-94 349.7 371 47.7
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.9e-92 343.6 346 50.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 4.7e-91 339.0 374 48.1
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.3e-88 330.9 458 42.4
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 8.3e-88 328.2 296 55.4
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 4.6e-86 322.4 369 48.0
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 5.9e-86 322.0 358 48.0
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 8.0e-83 311.6 266 58.3
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 9.8e-81 304.7 378 45.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 4.4e-73 279.3 177 83.6
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.0e-69 268.1 347 43.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.1e-68 264.6 347 42.1
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.1e-68 264.6 380 40.3
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 6.2e-67 258.8 375 40.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.1e-62 243.8 182 62.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.9e-60 237.3 199 59.3
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.4e-58 231.1 202 55.4
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 2.4e-58 230.3 226 53.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.2e-47 193.4 290 37.9
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.8e-43 180.3 243 40.3
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 2.9e-40 170.2 163 52.1
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.0e-37 161.8 296 34.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.3e-36 156.4 132 53.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.1e-35 154.1 132 53.0
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 3.1e-34 150.2 144 50.0
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-31 140.6 132 50.8
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 2.5e-28 130.6 252 40.5
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.4e-26 124.8 105 60.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.5e-23 112.8 95 49.5
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.2e-23 112.5 95 48.4
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 9.3e-23 112.1 95 49.5
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 7.9e-22 109.0 282 29.1
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.0e-21 107.1 111 45.9
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.1e-21 106.3 95 46.3
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.3e-20 103.6 100 47.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-18 97.8 86 59.3
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 5.5e-15 86.3 72 50.0
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.6e-14 84.7 82 53.7
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.1e-14 84.3 187 34.8
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.8e-13 81.3 98 45.9
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.8e-13 81.3 98 45.9
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.7e-13 79.3 65 61.5
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 8.8e-13 79.0 65 61.5
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.7e-11 73.6 59 61.0
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.1e-10 72.0 45 77.8
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.7e-08 64.7 58 56.9


User provided reference genes

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