Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO729G0122 Papaver somniferum HOM05D004046 ORTHO05D004716 4.3e-121 438.0 215 100.0
PSO724G1081 Papaver somniferum HOM05D004046 ORTHO05D004716 8.3e-64 247.7 128 94.5
PSO541G2302 Papaver somniferum HOM05D004046 ORTHO05D004716 3.1e-63 245.7 128 93.8
PSO675G4097 Papaver somniferum HOM05D004046 ORTHO05D004716 3.1e-63 245.7 128 93.8
Nn4g23875 Nelumbo nucifera HOM05D004046 ORTHO05D004716 6.6e-61 238.0 126 91.3
Aqoxy3G02119 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 1.9e-60 236.5 128 87.5
Aqoxy3G03929 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 4.3e-60 235.3 128 87.5
GSVIVG01031287001 Vitis vinifera HOM05D004046 ORTHO05D004716 5.6e-60 235.0 126 89.7
QL03p017764 Quercus lobata HOM05D004046 ORTHO05D004716 9.5e-60 234.2 126 88.9
arahy.Tifrunner.gnm1.ann1.9T0Q39 Arachis hypogaea HOM05D004046 ORTHO05D004716 2.8e-59 232.6 128 86.7
arahy.Tifrunner.gnm1.ann1.D04R4W Arachis hypogaea HOM05D004046 ORTHO05D004716 2.8e-59 232.6 128 86.7
COL.COLO4_14791 Corchorus olitorius HOM05D004046 ORTHO05D004716 3.6e-59 232.3 126 87.3
ATR0564G175 Amborella trichopoda HOM05D004046 ORTHO05D004716 4.7e-59 231.9 126 88.9
VMungo0540G2486 Vigna mungo HOM05D004046 ORTHO05D004716 4.7e-59 231.9 126 87.3
MBI18_g27392_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 6.1e-59 231.5 126 87.3
Duzib106G1933 Durio zibethinus HOM05D004046 ORTHO05D004716 8.0e-59 231.1 126 88.1
TWI53G0737 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 8.0e-59 231.1 117 92.3
CSS0016663 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 87.3
CSS0022787 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 87.3
CSS0043761 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 87.3
CiPaw.07G032600 Carya illinoinensis HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 88.1
MELO3C004163.2 Cucumis melo HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 86.5
CsaV3_2G007260 Cucumis sativus L. HOM05D000028 ORTHO05D004716 1.0e-58 230.7 126 86.5
Manes.09G093100 Manihot esculenta HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 87.3
Potri.009G069800 Populus trichocarpa HOM05D004046 ORTHO05D004716 1.0e-58 230.7 126 87.3
PGR031G1682 Punica granatum HOM05D004046 ORTHO05D004716 1.0e-58 230.7 127 86.6
Gohir.D09G151200 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.4e-58 230.3 126 86.5
Gorai.006G172500 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.4e-58 230.3 126 86.5
SalBow7G4079 Salvia bowleyana HOM05D004046 ORTHO05D004716 1.4e-58 230.3 126 88.9
CiPaw.07G032200 Carya illinoinensis HOM05D004046 ORTHO05D004716 2.3e-58 229.6 119 91.6
QL02p093330 Quercus lobata HOM05D004046 ORTHO05D004716 2.3e-58 229.6 126 87.3
Ciclev10012951m.g Citrus clementina HOM05D004046 ORTHO05D004716 3.0e-58 229.2 126 87.3
Dinv24482 Davidia involucrata HOM05D004046 ORTHO05D004716 3.0e-58 229.2 126 87.3
Rhsim11G0098900 Rhododendron simsii HOM05D004046 ORTHO05D004716 3.0e-58 229.2 126 89.7
Sc09g0002540 Simmondsia chinensis HOM05D004046 ORTHO05D004716 3.0e-58 229.2 126 88.1
Thecc.05G038900 Theobroma cacao HOM05D004046 ORTHO05D004716 3.0e-58 229.2 126 87.3
Actinidia16884 Actinidia chinensis HOM05D004046 ORTHO05D004716 4.0e-58 228.8 126 88.1
AUR62006779 Chenopodium quinoa HOM05D004046 ORTHO05D004716 4.0e-58 228.8 126 86.5
Haze_04031 Corylus avellana HOM05D004046 ORTHO05D004716 4.0e-58 228.8 126 88.1
Lalb_Chr18g0054271 Lupinus albus HOM05D004046 ORTHO05D004716 4.0e-58 228.8 126 85.7
MD14G1013000 Malus domestica HOM05D004046 ORTHO05D004716 4.0e-58 228.8 126 88.1
Hund21854 Selenicereus undatus HOM05D004046 ORTHO05D004716 4.0e-58 228.8 126 88.1
CANSAT54G1174 Cannabis sativa HOM05D004046 ORTHO05D004716 5.2e-58 228.4 126 88.1
AUR62000434 Chenopodium quinoa HOM05D004046 ORTHO05D004716 5.2e-58 228.4 126 87.3
Sed0010909 Sechium edule HOM05D004046 ORTHO05D004716 5.2e-58 228.4 126 86.5
SGA_v2.0_scaffold4G01982 Striga asiatica HOM05D004046 ORTHO05D004716 5.2e-58 228.4 126 87.3
ClCG02G014740 Citrullus lanatus HOM05D004046 ORTHO05D004716 6.8e-58 228.0 126 86.5
Gohir.A11G326900 Gossypium hirsutum HOM05D004046 ORTHO05D004716 6.8e-58 228.0 126 86.5
Gorai.007G376100 Gossypium raimondii HOM05D004046 ORTHO05D004716 6.8e-58 228.0 126 86.5
Peaxi162Scf00357g00620 Petunia axillaris HOM05D004046 ORTHO05D004716 6.8e-58 228.0 126 86.5
unitig_699.g19663 Utricularia gibba HOM05D004046 ORTHO05D004716 8.9e-58 227.6 126 87.3
Ah.15g096470 Amaranthus hybridus HOM05D004046 ORTHO05D004716 1.2e-57 227.3 126 86.5
Phvul.006G077300 Phaseolus vulgaris HOM05D004046 ORTHO05D004716 1.2e-57 227.3 126 85.7
RcHm_v2.0_Chr3g0457701 Rosa chinensis HOM05D004046 ORTHO05D004716 1.2e-57 227.3 126 88.1
TWI74G0996 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 1.2e-57 227.3 117 90.6
TAR362G0840 Trochodendron aralioides HOM05D004046 ORTHO05D004716 1.2e-57 227.3 126 87.3
Cfa006729 Carpinus fangiana HOM05D004046 ORTHO05D004716 1.5e-57 226.9 126 87.3
Prupe.6G309100 Prunus persica HOM05D004046 ORTHO05D004716 1.5e-57 226.9 126 86.5
PGR083G0204 Punica granatum HOM05D004046 ORTHO05D004716 1.5e-57 226.9 127 85.8
MSTRG.16415 Avicennia marina HOM05D004046 ORTHO05D004716 2.6e-57 226.1 126 87.3
Hma1.2p1_0052F.1_g030600 Hydrangea macrophylla HOM05D004046 ORTHO05D004716 2.6e-57 226.1 126 87.3
THA.LOC104823263 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 2.6e-57 226.1 126 86.5
THA.LOC104827016 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 2.6e-57 226.1 126 86.5
EL10Ac4g09510 Beta vulgaris HOM05D004046 ORTHO05D004716 3.4e-57 225.7 126 86.5
Cpa.g.sc188.2 Carica papaya HOM05D004046 ORTHO05D004716 3.4e-57 225.7 126 84.9
CiPaw.08G153400 Carya illinoinensis HOM05D004046 ORTHO05D004716 3.4e-57 225.7 117 91.5
Lsat_1_v5_gn_4_12481 Lactuca sativa HOM05D004046 ORTHO05D004716 3.4e-57 225.7 126 87.3
Nitab4.5_0003044g0050 Nicotiana tabacum HOM05D004046 ORTHO05D004716 3.4e-57 225.7 126 86.5
Nitab4.5_0011298g0030 Nicotiana tabacum HOM05D004046 ORTHO05D004716 3.4e-57 225.7 126 86.5
Medtr8g103680 Medicago truncatula HOM05D004046 ORTHO05D004716 4.4e-57 225.3 126 84.1
MBI19_g32693_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 5.7e-57 224.9 126 84.1
CAN.G1076.45 Capsicum annuum HOM05D004046 ORTHO05D004716 7.5e-57 224.6 126 86.5
Solyc01g100840.3 Solanum lycopersicum HOM05D004046 ORTHO05D004716 9.8e-57 224.2 117 91.5
Glyma.18G053900 Glycine max HOM05D004046 ORTHO05D004716 1.3e-56 223.8 126 84.9
CDE08G1157 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 1.7e-56 223.4 128 85.2
Dinv30922 Davidia involucrata HOM05D004046 ORTHO05D004716 1.7e-56 223.4 126 86.5
FvH4_6g08030 Fragaria vesca HOM05D004046 ORTHO05D004716 1.7e-56 223.4 126 86.5
FAN05G0549 Fragaria x ananassa HOM05D004046 ORTHO05D004716 1.7e-56 223.4 126 86.5
Sopen01g044340 Solanum pennellii HOM05D004046 ORTHO05D004716 1.7e-56 223.4 126 86.5
EL10Ac1g01013 Beta vulgaris HOM05D004046 ORTHO05D004716 2.2e-56 223.0 126 85.7
ECA236G0372 Erigeron canadensis HOM05D004046 ORTHO05D004716 2.2e-56 223.0 126 85.7
FAN02G0090 Fragaria x ananassa HOM05D004046 ORTHO05D004716 2.2e-56 223.0 117 91.5
FAN14G5596 Fragaria x ananassa HOM05D004046 ORTHO05D004716 2.2e-56 223.0 126 86.5
Cc02_g35390 Coffea canephora HOM05D004046 ORTHO05D004716 2.9e-56 222.6 117 90.6
Manes.08G080100 Manihot esculenta HOM05D004046 ORTHO05D004716 2.9e-56 222.6 126 84.1
PGSC0003DMG400002754 Solanum tuberosum HOM05D004046 ORTHO05D004716 2.9e-56 222.6 126 85.7
Glyma.11G160100 Glycine max HOM05D004046 ORTHO05D004716 3.7e-56 222.2 126 84.1
DCAR_003336 Daucus carota HOM05D004046 ORTHO05D004716 4.9e-56 221.9 140 79.3
Thhalv10022901m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 4.9e-56 221.9 128 83.6
Lj3g0003008 Lotus japonicus HOM05D004046 ORTHO05D004716 4.9e-56 221.9 126 84.1
Medtr5g075330 Medicago truncatula HOM05D004046 ORTHO05D004716 4.9e-56 221.9 126 82.5
HanXRQChr05g0144301 Helianthus annuus HOM05D004046 ORTHO05D004716 6.4e-56 221.5 126 85.7
HanXRQChr14g0432401 Helianthus annuus HOM05D004046 ORTHO05D004716 6.4e-56 221.5 126 85.7
TPR.G22016 Trifolium pratense HOM05D004046 ORTHO05D004716 6.4e-56 221.5 126 83.3
AagrBONN_evm.TU.Sc2ySwM_228.3974 Anthoceros agrestis HOM05D004046 ORTHO05D004716 8.3e-56 221.1 128 80.5
MSTRG.19613 Avicennia marina HOM05D004046 ORTHO05D004716 1.1e-55 220.7 126 84.1
MD12G1203200 Malus domestica HOM05D004046 ORTHO05D004716 1.4e-55 220.3 126 84.9
TPR.G18674 Trifolium pratense HOM05D004046 ORTHO05D004716 1.4e-55 220.3 126 82.5
Glyma.09G274900 Glycine max HOM05D004046 ORTHO05D004716 2.4e-55 219.5 126 83.3
Sabra09G0052700 Salix brachista HOM05D004046 ORTHO05D004716 2.4e-55 219.5 141 78.0
Lj6g0018597 Lotus japonicus HOM05D004046 ORTHO05D004716 4.1e-55 218.8 126 82.5
Psat2g051160 Pisum sativum HOM05D000114 ORTHO05D000075 4.1e-55 218.8 117 86.3
AL6G11540 Arabidopsis lyrata HOM05D004046 ORTHO05D004716 5.4e-55 218.4 126 83.3
AT5G02280 Arabidopsis thaliana HOM05D004046 ORTHO05D004716 5.4e-55 218.4 126 83.3
CSS0015916 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 5.4e-55 218.4 126 84.9
CARHR211090 Cardamine hirsuta HOM05D004046 ORTHO05D004716 5.4e-55 218.4 126 83.3
Migut.B00856 Erythranthe guttata HOM05D004046 ORTHO05D004716 5.4e-55 218.4 126 84.1
Sp6g40170 Schrenkiella parvula HOM05D004046 ORTHO05D004716 5.4e-55 218.4 126 83.3
Aa31LG1G22470 Aethionema arabicum HOM05D004046 ORTHO05D004716 7.0e-55 218.0 126 83.3
Carub.0006s0112 Capsella rubella HOM05D004046 ORTHO05D004716 7.0e-55 218.0 126 83.3
A10p33340 Brassica napus HOM05D004046 ORTHO05D004716 9.2e-55 217.6 126 82.5
C09p74250 Brassica napus HOM05D004046 ORTHO05D004716 1.2e-54 217.2 126 82.5
BolC9t60158H Brassica oleracea HOM05D004046 ORTHO05D004716 1.2e-54 217.2 126 82.5
BraA10t45365Z Brassica rapa HOM05D004046 ORTHO05D004716 1.2e-54 217.2 126 82.5
Nitab4.5_0022238g0010 Nicotiana tabacum HOM05D004046 ORTHO05D004716 1.2e-54 217.2 126 83.3
BcaB01g06156 Brassica carinata HOM05D004046 ORTHO05D004716 1.6e-54 216.9 126 81.7
A03p00610 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-54 216.9 126 81.7
C03p00880 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-54 216.9 126 81.7
Oeu024971.3 Olea europaea HOM05D004046 ORTHO05D004716 1.6e-54 216.9 144 77.1
Duzib093G2058 Durio zibethinus HOM05D004046 ORTHO05D004716 2.0e-54 216.5 126 83.3
SEGI_05351 Sequoiadendron giganteum HOM05D004046 ORTHO05D004716 2.0e-54 216.5 126 84.1
BcaB01g06221 Brassica carinata HOM05D004046 ORTHO05D004716 3.5e-54 215.7 126 81.7
Gohir.A09G155700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 3.5e-54 215.7 126 83.3
Ca_05705_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 4.6e-54 215.3 126 81.0
Ca_30743_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 4.6e-54 215.3 126 81.0
Os06g0151300 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 5.9e-54 214.9 127 80.3
Os07g0454700 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 7.8e-54 214.5 126 81.0
Zm00001eb376880 Zea mays HOM05D004046 ORTHO05D004716 2.3e-53 213.0 126 81.0
DCAR_022169 Daucus carota HOM05D004046 ORTHO05D004716 3.9e-53 212.2 125 81.6
Pp3c15_20530 Physcomitrium patens HOM05D004046 ORTHO05D004716 1.2e-51 207.2 119 80.7
Mapoly0130s0031 Marchantia polymorpha HOM05D004046 ORTHO05D004716 1.0e-50 204.1 126 77.8
Pp3c9_17970 Physcomitrium patens HOM05D004046 ORTHO05D004716 3.4e-49 199.1 121 77.7
Eucgr.H04106 Eucalyptus grandis HOM05D004046 ORTHO05D004716 4.4e-49 198.7 108 85.2
SMO270G0009 Selaginella moellendorffii HOM05D004046 ORTHO05D004716 1.9e-47 193.4 117 78.6
vmacro01590 Vaccinium macrocarpon HOM05D004046 ORTHO05D004716 2.7e-46 189.5 219 51.6
Actinidia27689 Actinidia chinensis HOM05D004046 ORTHO05D004716 3.9e-45 185.7 95 92.6
Gorai.003G067000 Gossypium raimondii HOM05D004046 ORTHO05D004716 6.6e-45 184.9 111 77.5
CBR_g30870 Chara braunii HOM05D004046 ORTHO05D004716 1.1e-44 184.1 127 65.4
Thhalv10015468m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 4.0e-42 175.6 100 83.0
Cre02.g077500 Chlamydomonas reinhardtii HOM05D004046 ORTHO05D004716 5.2e-42 175.3 126 64.3
Gorai.N004900 Gossypium raimondii HOM05D004046 ORTHO05D004716 8.9e-42 174.5 91 86.8
CDE02G1414 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 1.5e-41 173.7 100 83.0
Gohir.D13G093250 Gossypium hirsutum HOM05D004046 ORTHO05D004716 9.8e-41 171.0 115 73.0
DCAR_022168 Daucus carota HOM05D004046 ORTHO05D004716 2.9e-40 169.5 100 81.0
Gohir.D07G166050 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.4e-39 165.2 91 82.4
Gohir.D11G230500 Gossypium hirsutum HOM05D004046 ORTHO05D004716 7.1e-39 164.9 100 77.0
Peaxi162Scf00672g00088 Petunia axillaris HOM05D004046 ORTHO05D004716 2.7e-38 162.9 94 80.9
Gorai.010G140600 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.6e-35 153.7 141 58.9
Nn6g34665 Nelumbo nucifera HOM05D004046 ORTHO05D004716 6.2e-35 151.8 77 93.5
HanXRQChr12g0382401 Helianthus annuus HOM05D004046 ORTHO05D004716 1.5e-33 147.1 82 85.4
HanXRQChr01g0011571 Helianthus annuus HOM05D004046 ORTHO05D004716 4.4e-33 145.6 76 89.5
PRCOL_00000225 Prasinoderma coloniale HOM05D004046 ORTHO05D004716 2.9e-32 142.9 119 54.6
CSS0046633 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 3.5e-30 136.0 84 77.4
Gorai.004G096700 Gossypium raimondii HOM05D004046 ORTHO05D004716 4.6e-30 135.6 79 78.5
Gorai.007G198600 Gossypium raimondii HOM05D004046 ORTHO05D004716 4.0e-26 122.5 100 63.0
Gohir.D11G186701 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.3e-21 107.5 100 56.0
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 3.9e-21 105.9 148 45.3
Gohir.D12G239250 Gossypium hirsutum HOM05D004046 ORTHO05D004716 2.9e-16 89.7 66 65.2
Gohir.A05G345101 Gossypium hirsutum HOM05D004046 ORTHO05D004716 4.9e-16 89.0 51 78.4
Gohir.A11G126151 Gossypium hirsutum HOM05D004046 ORTHO05D004716 4.9e-16 89.0 51 78.4
Gohir.A11G213700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 4.9e-16 89.0 51 78.4
Gohir.A10G132500 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.4e-15 87.4 96 51.0
Gohir.D05G370366 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.9e-15 87.0 53 73.6
GSVIVG01031279001 Vitis vinifera HOM05D004046 ORTHO05D004716 1.2e-14 84.3 59 69.5
GSVIVG01031275001 Vitis vinifera HOM05D004046 ORTHO05D004716 3.5e-14 82.8 59 67.8
Gorai.013G182400 Gossypium raimondii HOM05D004046 ORTHO05D004716 4.6e-14 82.4 41 85.4
Gorai.010G151900 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.0e-13 81.3 48 75.0
GSVIVG01031283001 Vitis vinifera HOM05D004046 ORTHO05D004716 1.3e-13 80.9 44 84.1
CiPaw.07G032000 Carya illinoinensis HOM05D004046 ORTHO05D004716 1.3e-11 74.3 41 82.9
Gohir.D10G086816 Gossypium hirsutum HOM05D004046 ORTHO05D003157 1.6e-11 73.9 45 73.3
RcHm_v2.0_Chr4g0392831 Rosa chinensis HOM05D004046 ORTHO05D004716 2.4e-10 70.1 46 71.7
RcHm_v2.0_Chr2g0112131 Rosa chinensis HOM05D004046 ORTHO05D004716 5.8e-09 65.5 46 67.4
RcHm_v2.0_Chr4g0436621 Rosa chinensis HOM05D004046 ORTHO05D004716 9.9e-09 64.7 46 65.2
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 1.2e-06 57.8 131 27.5
Gohir.D03G049466 Gossypium hirsutum HOM05D004046 ORTHO05D004716 2.1e-06 57.0 37 70.3
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 2.1e-06 57.0 129 27.9
Gohir.D06G130050 Gossypium hirsutum HOM05D004046 ORTHO05D004716 4.6e-06 55.8 37 67.6
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 4.6e-06 55.8 144 25.7
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 7.9e-06 55.1 134 26.1
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 7.9e-06 55.1 144 25.7


User provided reference genes

Program Settings