Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 2.5e-96 355.5 188 100.0
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 5.9e-82 307.8 187 86.1
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 7.5e-61 237.7 188 72.3
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.7e-60 236.5 188 71.8
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.6e-15 85.9 134 45.5
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.4e-14 83.2 89 56.2
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.0e-14 82.4 118 47.5
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 5.3e-14 82.0 188 34.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.9e-14 81.6 89 55.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 9.0e-14 81.3 89 55.1
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.0e-14 81.3 89 55.1
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 5.8e-13 78.6 127 40.2
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-12 77.4 89 52.8
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-12 77.4 89 52.8
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 2.2e-12 76.6 89 52.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 2.4e-11 73.2 118 46.6
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.4e-11 73.2 118 46.6
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.2e-11 72.8 122 45.9
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 5.4e-11 72.0 128 45.3
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 5.4e-11 72.0 96 42.7
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.4e-11 72.0 97 42.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 9.3e-11 71.2 97 47.4
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 9.3e-11 71.2 117 42.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.1e-10 70.1 85 45.9
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.1e-10 70.1 114 44.7
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.1e-10 70.1 153 39.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 2.7e-10 69.7 122 43.4
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 3.5e-10 69.3 120 48.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 3.5e-10 69.3 120 48.3
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.5e-10 69.3 132 40.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.5e-10 69.3 130 43.1
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 6.0e-10 68.6 177 38.4
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.0e-10 68.6 180 40.6
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 6.0e-10 68.6 85 51.8
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 7.9e-10 68.2 117 46.2
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 7.9e-10 68.2 108 39.8
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 7.9e-10 68.2 130 46.9
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 7.9e-10 68.2 130 46.9
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 7.9e-10 68.2 125 48.8
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.9e-10 68.2 85 51.8
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.0e-09 67.8 96 47.9
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.0e-09 67.8 124 42.7
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.0e-09 67.8 118 46.6
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.0e-09 67.8 178 30.9
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.0e-09 67.8 115 42.6
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-09 67.0 89 48.3
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-09 67.0 89 48.3
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.8e-09 67.0 89 48.3
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.8e-09 67.0 89 48.3
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.8e-09 67.0 157 40.1
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.8e-09 67.0 128 42.2
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.3e-09 66.6 182 33.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.3e-09 66.6 182 33.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.0e-09 66.2 130 38.5
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.9e-09 65.9 96 44.8
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 3.9e-09 65.9 123 39.8
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 5.1e-09 65.5 102 45.1
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 5.1e-09 65.5 125 43.2
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 8.7e-09 64.7 96 42.7
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 8.7e-09 64.7 122 48.4
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 8.7e-09 64.7 175 31.4
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.1e-08 64.3 179 31.8
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.5e-08 63.9 178 32.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.9e-08 63.5 143 37.1
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.9e-08 63.5 117 43.6
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.9e-08 63.5 117 43.6
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.5e-08 63.2 186 38.7
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 2.5e-08 63.2 127 38.6
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.5e-08 63.2 181 31.5
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.5e-08 63.2 113 44.2
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.5e-08 63.2 117 48.7
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 2.5e-08 63.2 138 37.0
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.5e-08 63.2 117 42.7
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 3.3e-08 62.8 124 40.3
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.3e-08 62.8 128 37.5
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 3.3e-08 62.8 85 47.1
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.3e-08 62.8 143 36.4
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 4.3e-08 62.4 121 41.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 5.6e-08 62.0 180 34.4
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 5.6e-08 62.0 184 32.1
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 7.4e-08 61.6 188 31.4
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 7.4e-08 61.6 118 44.1
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 7.4e-08 61.6 125 40.8
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.6e-08 61.2 184 30.4
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 9.6e-08 61.2 188 30.9
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.3e-07 60.8 119 34.5
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.3e-07 60.8 138 37.7
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.6e-07 60.5 180 33.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.6e-07 60.5 178 33.7
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.1e-07 60.1 97 46.4
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 2.1e-07 60.1 125 40.8
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 2.8e-07 59.7 39 64.1
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 3.7e-07 59.3 95 41.1
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.7e-07 59.3 91 45.1
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.7e-07 59.3 181 35.4
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 3.7e-07 59.3 125 46.4
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 4.8e-07 58.9 91 45.1
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 4.8e-07 58.9 91 45.1
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 4.8e-07 58.9 91 45.1
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 4.8e-07 58.9 91 45.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 6.2e-07 58.5 85 45.9
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 6.2e-07 58.5 128 39.1
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 6.2e-07 58.5 111 42.3
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 8.1e-07 58.2 91 50.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 8.1e-07 58.2 125 40.8
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 8.1e-07 58.2 126 38.9
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 8.1e-07 58.2 85 40.0
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.1e-06 57.8 95 41.1
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.1e-06 57.8 79 51.9
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.4e-06 57.4 97 45.4
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.4e-06 57.4 83 56.6
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.4e-06 57.4 88 42.0
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.8e-06 57.0 140 32.1
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 2.4e-06 56.6 187 35.3
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.1e-06 56.2 102 38.2
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 3.1e-06 56.2 181 32.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 5.3e-06 55.5 100 47.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 5.3e-06 55.5 95 50.5
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 5.3e-06 55.5 144 34.0


User provided reference genes

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