Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.1e-127 459.9 230 100.0
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 3.4e-116 421.8 256 85.2
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.3e-91 340.1 221 75.6
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.2e-90 335.1 224 69.6
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 1.2e-89 333.6 224 72.3
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.8e-88 329.7 229 67.7
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 6.7e-88 327.8 223 71.3
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.5e-87 326.6 221 70.6
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.5e-87 326.6 225 72.4
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 3.3e-87 325.5 223 70.9
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 5.7e-87 324.7 225 72.0
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 7.4e-87 324.3 225 68.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-86 323.6 221 69.2
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.2e-86 322.8 230 68.3
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 3.7e-86 322.0 230 70.4
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 3.7e-86 322.0 223 70.9
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.2e-86 320.9 230 67.8
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.2e-86 320.9 230 67.8
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.4e-85 320.1 226 67.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.8e-85 319.7 229 67.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 3.1e-85 318.9 220 68.6
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 3.1e-85 318.9 228 68.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 7.0e-85 317.8 221 68.8
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 9.1e-85 317.4 230 67.0
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-84 317.0 225 68.4
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.0e-84 316.2 220 70.5
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.0e-84 316.2 221 71.5
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.6e-84 315.8 230 66.5
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.5e-84 315.5 226 66.4
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 3.5e-84 315.5 228 65.4
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.0e-83 313.9 224 67.0
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.0e-83 313.9 223 68.2
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.7e-83 313.2 227 68.7
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.2e-83 312.8 221 69.7
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.2e-83 312.8 221 69.7
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.2e-83 312.8 220 69.1
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 2.2e-83 312.8 222 66.7
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 2.9e-83 312.4 228 65.4
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 5.0e-83 311.6 226 66.4
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.0e-83 311.6 227 64.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 6.5e-83 311.2 222 67.1
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 6.5e-83 311.2 220 66.8
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 6.5e-83 311.2 223 69.5
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 8.5e-83 310.8 227 65.6
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 8.5e-83 310.8 224 67.4
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 8.5e-83 310.8 220 68.6
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.5e-82 310.1 224 67.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.9e-82 309.7 221 68.8
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.9e-82 309.7 224 66.5
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.2e-82 308.9 224 64.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 3.2e-82 308.9 221 70.1
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 4.2e-82 308.5 220 68.2
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 5.5e-82 308.1 230 67.0
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 5.5e-82 308.1 218 69.7
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 7.2e-82 307.8 225 65.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 7.2e-82 307.8 221 67.4
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 7.2e-82 307.8 220 67.7
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.6e-81 306.6 228 66.7
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 4.7e-81 305.1 229 65.9
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 4.7e-81 305.1 224 67.4
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 4.7e-81 305.1 222 66.2
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 2.3e-80 302.8 228 64.5
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.0e-80 302.4 228 64.5
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 4.0e-80 302.0 223 67.3
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 5.2e-80 301.6 225 66.7
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 8.8e-80 300.8 233 61.8
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 3.3e-79 298.9 219 64.4
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 9.7e-79 297.4 227 62.1
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.3e-78 294.7 234 61.1
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.8e-77 293.1 228 61.8
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.8e-77 293.1 229 62.9
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 3.1e-77 292.4 227 62.1
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.1e-77 292.4 228 61.8
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 4.1e-77 292.0 206 71.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.3e-77 291.6 228 61.8
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.3e-77 291.6 227 61.7
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.0e-77 291.2 228 61.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 7.0e-77 291.2 219 64.8
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 7.0e-77 291.2 230 60.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.7e-76 289.3 222 62.6
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 4.5e-76 288.5 228 61.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.7e-75 286.6 223 61.9
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 6.5e-75 284.6 216 66.7
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 6.5e-75 284.6 216 66.7
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.9e-74 283.1 228 61.0
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 2.5e-74 282.7 200 67.0
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.2e-73 280.4 223 59.2
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.6e-73 280.0 223 58.7
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.1e-73 279.6 228 59.2
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.1e-73 279.6 228 59.2
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.7e-73 279.3 222 61.3
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.7e-73 279.3 228 58.8
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.7e-73 279.3 283 54.1
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 6.1e-73 278.1 252 56.7
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.8e-72 276.6 228 58.3
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.8e-72 276.6 228 58.3
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.8e-72 276.6 216 63.0
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.3e-72 276.2 222 60.8
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 5.2e-72 275.0 228 58.8
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 5.2e-72 275.0 186 71.5
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.8e-72 274.6 228 59.2
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.8e-72 274.6 221 60.6
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 2.6e-71 272.7 194 67.0
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 3.4e-71 272.3 229 63.3
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 4.4e-71 271.9 226 57.5
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 5.7e-71 271.6 227 60.4
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.7e-70 270.0 227 57.3
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.7e-70 270.0 227 57.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 4.8e-70 268.5 227 56.8
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 4.8e-70 268.5 227 56.8
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 4.8e-70 268.5 227 56.8
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 6.3e-70 268.1 220 60.9
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-69 266.9 223 57.8
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.4e-69 266.2 218 62.4
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.4e-69 266.2 203 65.0
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.1e-69 265.8 224 58.0
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-68 263.8 223 57.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-68 263.8 250 54.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.7e-67 260.0 189 66.1
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-65 253.8 225 56.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.4e-64 250.4 220 56.4
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.2e-63 247.3 228 54.8
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.2e-63 247.3 228 54.8
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 2.0e-63 246.5 200 57.5
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 3.4e-63 245.7 209 58.4
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.7e-62 242.3 205 54.6
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 8.3e-62 241.1 196 61.2
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.3e-59 233.8 224 55.4
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.9e-59 232.3 190 57.4
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.0e-56 224.2 233 52.8
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 8.9e-56 221.1 161 62.1
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 2.0e-55 219.9 151 70.9
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.3e-54 217.2 151 69.5
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 8.3e-54 214.5 217 48.8
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.4e-53 213.0 158 63.3
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 5.4e-53 211.8 173 58.4
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-52 210.7 216 50.0
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.0e-51 207.6 215 48.4
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 2.3e-51 206.5 213 48.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 4.0e-48 195.7 183 55.2
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.8e-47 191.8 221 46.2
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.2e-45 184.5 230 47.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.2e-45 184.5 155 54.2
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 6.8e-40 168.3 120 62.5
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 9.9e-39 164.5 120 66.7
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.9e-37 160.2 179 43.6
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 3.0e-35 152.9 120 59.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.2e-30 136.7 124 57.3
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.9e-29 133.7 157 43.9
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 5.4e-29 132.1 86 73.3
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 4.6e-28 129.0 90 67.8
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.2e-23 114.4 204 31.9
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-20 104.4 73 65.8
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-18 97.1 151 41.7
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-18 97.1 151 41.7
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 2.5e-18 96.7 75 69.3
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.6e-17 94.0 80 56.2
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 6.4e-14 82.0 74 51.4
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.9e-12 75.1 68 57.4
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 4.8e-09 65.9 59 59.3
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 5.3e-08 62.4 53 52.8


User provided reference genes

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