Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-231 806.2 426 100.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 8.9e-219 763.5 406 96.6
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.7e-98 363.2 396 50.5
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.7e-97 360.5 409 47.9
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.7e-95 352.4 412 47.1
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 4.4e-93 345.9 404 48.8
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.7e-92 344.0 396 49.2
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 8.3e-92 341.7 406 45.8
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.4e-91 340.9 399 49.4
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.4e-91 340.1 406 45.6
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 3.5e-90 336.3 362 50.6
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 5.1e-89 332.4 404 46.5
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 9.5e-88 328.2 407 45.9
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.2e-87 327.8 403 45.2
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 2.8e-87 326.6 404 46.0
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.1e-86 324.7 404 46.0
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.2e-85 321.2 419 43.4
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.0e-85 320.5 394 46.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.4e-85 319.7 401 45.6
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 5.8e-85 318.9 408 44.4
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 9.9e-85 318.2 401 44.6
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.3e-84 317.8 407 44.2
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.7e-84 317.4 407 44.5
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.7e-84 317.4 408 45.3
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.4e-83 313.5 407 42.5
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.2e-83 313.2 407 43.5
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 4.2e-83 312.8 404 43.8
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 5.4e-83 312.4 428 42.3
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.1e-82 310.5 401 45.4
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.7e-82 310.1 399 44.4
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.7e-82 310.1 401 45.4
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.5e-82 309.7 403 45.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.5e-82 309.7 436 43.3
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.0e-81 308.1 405 43.5
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.3e-81 307.8 392 44.6
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.7e-81 307.4 422 43.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.9e-80 303.9 410 43.7
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.9e-80 303.9 393 45.0
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.9e-80 303.9 403 43.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.9e-80 303.9 395 44.6
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.3e-80 302.8 411 43.1
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 9.6e-80 301.6 399 44.4
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.6e-79 300.8 416 43.0
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.6e-79 299.7 401 43.9
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 4.7e-79 299.3 422 42.2
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 4.7e-79 299.3 399 44.6
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 6.2e-79 298.9 416 43.5
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 3.1e-78 296.6 439 39.4
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.1e-78 296.6 416 42.8
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 3.1e-78 296.6 428 41.6
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 4.0e-78 296.2 380 46.3
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.3e-78 295.8 410 41.7
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 6.9e-78 295.4 400 43.8
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.0e-77 293.9 407 44.2
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 2.0e-77 293.9 400 43.8
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 2.6e-77 293.5 408 43.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 2.6e-77 293.5 401 44.1
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.9e-77 291.6 405 43.5
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.3e-76 291.2 399 41.4
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.2e-76 290.4 397 43.6
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.2e-76 290.4 398 42.2
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-76 290.0 405 43.5
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.9e-76 289.3 405 43.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.4e-76 288.9 405 43.2
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-75 288.1 394 43.7
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.9e-75 287.3 403 43.4
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 3.2e-75 286.6 411 40.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 5.4e-75 285.8 401 41.6
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 7.1e-75 285.4 417 41.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 9.3e-75 285.0 412 42.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 9.3e-75 285.0 407 42.0
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-74 284.6 400 42.2
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 4.6e-74 282.7 392 42.6
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 6.0e-74 282.3 398 42.7
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 6.6e-73 278.9 439 39.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 8.7e-73 278.5 405 40.5
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.1e-72 278.1 400 40.0
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 4.3e-72 276.2 398 41.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.3e-71 274.6 400 40.0
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 2.8e-71 273.5 410 39.5
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 3.6e-71 273.1 426 40.1
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.8e-71 272.7 401 42.4
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 6.2e-71 272.3 415 41.2
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.2e-71 272.3 473 37.2
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.0e-70 269.6 441 39.5
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 5.3e-70 269.2 415 40.5
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 9.0e-70 268.5 403 40.2
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.6e-69 266.9 393 41.7
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.5e-69 266.2 358 43.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 9.9e-69 265.0 401 42.1
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 3.2e-67 260.0 412 41.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 5.4e-67 259.2 394 39.1
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 9.3e-67 258.5 397 39.0
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 9.3e-67 258.5 402 39.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.7e-66 256.9 409 41.3
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 3.5e-66 256.5 396 38.9
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.3e-65 254.6 396 38.6
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.0e-65 253.4 398 38.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.0e-65 253.4 398 38.4
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.0e-65 253.4 398 38.4
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.3e-64 249.6 399 37.8
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.2e-63 245.7 398 37.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 8.1e-63 245.4 401 38.9
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 8.1e-63 245.4 324 43.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.4e-62 244.6 613 29.9
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 3.1e-62 243.4 399 37.8
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 2.5e-59 233.8 410 38.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.2e-59 233.0 425 35.3
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 6.7e-57 225.7 402 38.1
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 3.7e-55 219.9 306 42.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 6.9e-54 215.7 442 34.6
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.5e-53 213.0 390 39.2
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 4.9e-52 209.5 404 35.9
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.2e-47 194.1 390 34.1
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.2e-44 184.1 406 34.0
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.8e-44 183.3 278 41.0
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 3.6e-42 176.8 145 67.6
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.5e-40 171.4 448 32.4
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 2.5e-40 170.6 398 33.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 4.3e-40 169.9 450 31.3
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 5.7e-40 169.5 355 33.2
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 2.2e-39 167.5 308 37.7
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.2e-37 161.8 229 41.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 5.5e-35 152.9 248 36.7
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.1e-33 146.4 205 42.9
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 6.7e-33 146.0 229 35.8
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.0e-32 144.4 238 37.0
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.2e-31 141.0 317 32.5
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-28 131.7 367 32.2
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.2e-28 131.0 276 35.9
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.1e-26 124.4 405 29.1
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 6.7e-25 119.4 409 28.9
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.3e-24 117.1 154 42.2
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.4e-24 116.7 242 33.5
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.7e-24 116.3 314 32.8
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 9.7e-24 115.5 146 43.8
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.3e-23 115.2 153 41.8
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 3.5e-21 107.1 433 25.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.7e-20 104.8 145 40.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 2.9e-20 104.0 344 30.2
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 4.7e-18 96.7 117 45.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-16 91.3 161 39.1
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-15 88.2 396 26.0
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 4.8e-15 86.7 116 41.4
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.1e-14 84.0 203 31.5
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.7e-13 80.9 141 38.3
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.8e-12 77.0 89 44.9
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 6.5e-12 76.3 105 41.0
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-10 72.0 118 39.0
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-08 65.5 125 38.4
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-08 65.5 125 38.4
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 3.4e-08 63.9 242 26.4
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 4.4e-08 63.5 151 31.1
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 5.7e-08 63.2 154 31.8
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 4.1e-06 57.0 91 34.1


User provided reference genes

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