Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G1042 Papaver somniferum HOM05D004310 ORTHO05D005403 9.0e-148 526.9 274 100.0
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 1.6e-48 197.2 269 48.7
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 8.4e-45 184.9 269 47.2
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.6e-24 117.5 230 39.6
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 1.5e-22 110.9 278 34.5
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 2.6e-22 110.2 279 33.3
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 8.5e-21 105.1 286 34.6
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 2.5e-20 103.6 264 34.1
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 5.5e-20 102.4 269 35.7
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 3.6e-19 99.8 153 41.8
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 7.9e-19 98.6 291 32.6
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.8e-18 97.4 278 33.5
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 2.3e-18 97.1 82 59.8
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 2.3e-18 97.1 93 57.0
MBI13_g41012_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 3.0e-18 96.7 270 33.0
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 3.9e-18 96.3 246 35.8
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 5.1e-18 95.9 292 33.2
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 5.1e-18 95.9 93 55.9
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.1e-18 95.9 77 59.7
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 6.7e-18 95.5 272 32.4
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 6.7e-18 95.5 268 31.0
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 8.8e-18 95.1 76 60.5
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 1.5e-17 94.4 126 43.7
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 2.5e-17 93.6 105 49.5
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 2.5e-17 93.6 284 31.0
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 3.3e-17 93.2 298 31.5
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 4.3e-17 92.8 264 32.2
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 4.3e-17 92.8 105 49.5
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 4.3e-17 92.8 91 53.8
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.7e-17 92.4 108 50.0
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.7e-17 92.4 95 49.5
FAN06G2445 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.7e-17 92.4 95 49.5
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 7.4e-17 92.0 74 63.5
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 9.7e-17 91.7 150 40.7
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 9.7e-17 91.7 284 31.3
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 1.3e-16 91.3 248 30.6
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.7e-16 90.9 261 34.1
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 2.2e-16 90.5 280 31.8
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 2.2e-16 90.5 130 43.1
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 2.2e-16 90.5 128 43.8
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 2.8e-16 90.1 76 59.2
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 3.7e-16 89.7 105 45.7
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 3.7e-16 89.7 278 33.1
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 4.8e-16 89.4 265 32.1
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 6.3e-16 89.0 61 67.2
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 8.2e-16 88.6 233 36.1
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 1.1e-15 88.2 180 35.6
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.1e-15 88.2 123 43.9
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 1.4e-15 87.8 153 43.1
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 1.8e-15 87.4 224 35.3
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 1.8e-15 87.4 66 65.2
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 1.8e-15 87.4 128 43.0
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.8e-15 87.4 127 43.3
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 4.1e-15 86.3 84 53.6
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 4.1e-15 86.3 145 37.9
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 4.1e-15 86.3 133 40.6
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 5.3e-15 85.9 269 31.2
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 5.3e-15 85.9 102 48.0
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 6.9e-15 85.5 288 31.2
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 6.9e-15 85.5 178 37.1
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 6.9e-15 85.5 130 40.8
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 9.1e-15 85.1 61 68.9
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 9.1e-15 85.1 66 63.6
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 9.1e-15 85.1 134 41.8
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 9.1e-15 85.1 293 31.7
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 9.1e-15 85.1 73 64.4
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.2e-14 84.7 179 36.3
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.2e-14 84.7 190 38.9
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.5e-14 84.3 174 36.2
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.5e-14 84.3 289 30.4
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 1.5e-14 84.3 297 29.6
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 1.5e-14 84.3 67 61.2
BcaC04g24118 Brassica carinata HOM05D004310 ORTHO05D005403 2.0e-14 84.0 118 39.8
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.0e-14 84.0 186 36.0
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 2.0e-14 84.0 76 56.6
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 2.0e-14 84.0 271 29.9
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 2.0e-14 84.0 143 38.5
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 2.0e-14 84.0 120 40.8
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 2.0e-14 84.0 131 42.0
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 2.6e-14 83.6 140 38.6
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.6e-14 83.6 210 33.8
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 3.4e-14 83.2 257 30.7
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 3.4e-14 83.2 191 36.1
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 3.4e-14 83.2 177 39.5
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 4.5e-14 82.8 257 30.7
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 4.5e-14 82.8 61 63.9
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 4.5e-14 82.8 145 40.0
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 5.9e-14 82.4 61 62.3
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 5.9e-14 82.4 88 48.9
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 7.7e-14 82.0 165 38.2
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 7.7e-14 82.0 181 35.9
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 7.7e-14 82.0 283 30.0
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 7.7e-14 82.0 195 34.4
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 7.7e-14 82.0 195 34.9
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 1.0e-13 81.6 125 40.8
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 1.0e-13 81.6 120 43.3
SEGI_04150 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 1.0e-13 81.6 127 39.4
SEGI_12000 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 1.0e-13 81.6 127 39.4
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 1.7e-13 80.9 176 34.1
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 1.7e-13 80.9 280 30.0
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 2.2e-13 80.5 274 32.1
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 2.9e-13 80.1 61 60.7
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 2.9e-13 80.1 176 34.1
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 2.9e-13 80.1 153 38.6
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 5.0e-13 79.3 187 35.3
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 6.5e-13 79.0 133 42.1
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 6.5e-13 79.0 192 33.3
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 1.1e-12 78.2 190 33.2
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 1.4e-12 77.8 211 35.1
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 2.5e-12 77.0 176 33.5
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 2.5e-12 77.0 233 30.5
CARHR249350 Cardamine hirsuta HOM05D004310 ORTHO05D005403 3.2e-12 76.6 55 69.1
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 3.2e-12 76.6 240 32.1
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 4.2e-12 76.3 190 34.2
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 5.5e-12 75.9 258 29.1
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 5.5e-12 75.9 212 33.0
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 5.5e-12 75.9 221 30.8
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 7.2e-12 75.5 177 33.9
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 9.4e-12 75.1 188 37.2
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 1.2e-11 74.7 61 57.4
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 1.2e-11 74.7 284 28.5
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 1.2e-11 74.7 179 35.2
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.6e-11 74.3 60 58.3
C09p73290 Brassica napus HOM05D004310 ORTHO05D040128 3.6e-11 73.2 78 50.0
ATR0602G109 Amborella trichopoda HOM05D004310 ORTHO05D005403 1.8e-10 70.9 47 76.6
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 2.3e-10 70.5 58 58.6
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 2.3e-10 70.5 58 58.6
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 3.0e-10 70.1 49 69.4
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 3.9e-10 69.7 59 57.6
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 5.1e-10 69.3 254 31.9
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 5.1e-10 69.3 60 55.0
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 8.8e-10 68.6 55 56.4
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 8.8e-10 68.6 55 56.4
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 8.8e-10 68.6 55 56.4
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 2.0e-09 67.4 278 29.5
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 3.3e-09 66.6 302 26.8
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 4.1e-07 59.7 74 44.6
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 5.3e-07 59.3 60 53.3
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 2.0e-06 57.4 76 42.1
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 2.6e-06 57.0 60 50.0
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 4.5e-06 56.2 63 47.6
RcHm_v2.0_Chr1g0344721 Rosa chinensis HOM05D004310 ORTHO05D005403 4.5e-06 56.2 45 62.2
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 7.7e-06 55.5 76 44.7
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 7.7e-06 55.5 62 48.4
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 7.7e-06 55.5 62 48.4
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 7.7e-06 55.5 62 48.4
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 7.7e-06 55.5 62 48.4


User provided reference genes

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