Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 3.9e-128 461.5 231 100.0
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 5.7e-127 457.6 231 98.7
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 3.8e-107 391.7 232 81.9
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 5.0e-107 391.3 227 85.9
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 6.5e-107 391.0 224 84.4
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 8.5e-107 390.6 232 82.8
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 8.5e-107 390.6 236 80.9
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.4e-106 389.8 234 82.5
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 1.9e-106 389.4 234 81.6
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 1.9e-106 389.4 232 83.6
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 3.2e-106 388.7 238 81.9
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.2e-106 388.7 233 80.3
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 3.2e-106 388.7 229 83.8
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 4.2e-106 388.3 232 81.9
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 5.5e-106 387.9 232 81.5
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 5.5e-106 387.9 233 80.3
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.5e-106 387.9 233 80.3
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 7.2e-106 387.5 238 80.7
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-105 386.3 233 79.4
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-105 386.3 233 79.8
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-105 386.3 233 79.8
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.6e-105 386.3 233 82.0
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 2.1e-105 386.0 233 81.5
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.1e-105 386.0 236 80.9
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 2.7e-105 385.6 234 81.6
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 2.7e-105 385.6 224 83.5
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.6e-105 385.2 231 81.4
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 8.0e-105 384.0 233 82.4
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.0e-104 383.6 232 81.5
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 1.8e-104 382.9 234 79.5
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.3e-104 382.5 234 81.6
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 2.3e-104 382.5 231 79.7
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 2.3e-104 382.5 224 81.2
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 3.0e-104 382.1 235 81.3
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 3.0e-104 382.1 231 80.5
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 5.2e-104 381.3 233 80.7
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 6.7e-104 380.9 229 80.3
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.5e-103 379.8 237 78.5
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.0e-103 379.4 233 78.1
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 2.6e-103 379.0 231 81.0
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 5.7e-103 377.9 240 77.1
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 9.7e-103 377.1 224 81.2
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 9.7e-103 377.1 236 78.8
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.7e-102 376.3 231 79.2
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.2e-102 375.9 224 81.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 2.8e-102 375.6 235 78.3
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 3.7e-102 375.2 232 78.9
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 4.8e-102 374.8 231 80.1
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 6.3e-102 374.4 224 80.8
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 8.2e-102 374.0 229 79.9
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.4e-101 373.2 231 78.8
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.8e-101 372.9 221 81.0
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 2.4e-101 372.5 238 77.7
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 2.4e-101 372.5 233 78.1
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 2.4e-101 372.5 221 82.4
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 5.3e-101 371.3 231 79.7
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 5.3e-101 371.3 224 79.5
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 7.0e-101 370.9 231 79.2
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 7.0e-101 370.9 233 77.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 9.1e-101 370.5 233 77.7
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.6e-100 369.8 234 80.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.6e-100 369.8 224 78.1
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.6e-100 369.8 224 78.1
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 2.0e-100 369.4 226 78.8
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 4.5e-100 368.2 226 78.8
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 4.5e-100 368.2 223 80.7
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 4.5e-100 368.2 226 77.9
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 4.5e-100 368.2 226 77.9
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 7.7e-100 367.5 236 77.1
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.0e-99 367.1 231 75.8
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 1.7e-99 366.3 227 78.0
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 2.2e-99 365.9 220 80.5
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.9e-99 365.5 246 75.2
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 2.9e-99 365.5 232 79.3
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 5.0e-99 364.8 226 79.6
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 1.1e-98 363.6 237 78.5
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 4.2e-98 361.7 230 74.8
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 7.2e-98 360.9 238 75.2
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.1e-97 359.4 220 78.6
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 2.1e-97 359.4 223 77.6
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 2.7e-97 359.0 239 72.8
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 4.7e-97 358.2 232 74.6
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 6.1e-97 357.8 231 77.1
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 8.0e-97 357.5 232 75.0
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 2.3e-96 355.9 232 73.3
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 2.3e-96 355.9 232 73.3
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 3.0e-96 355.5 233 73.8
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 3.0e-96 355.5 232 74.1
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 8.8e-96 354.0 233 73.8
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 8.8e-96 354.0 232 76.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.2e-95 353.6 226 75.2
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 2.0e-95 352.8 232 72.0
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 2.0e-95 352.8 232 74.1
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.0e-95 352.8 226 75.2
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 4.4e-95 351.7 226 74.8
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 5.7e-95 351.3 227 73.6
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 7.5e-95 350.9 232 71.6
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 9.7e-95 350.5 219 79.0
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.2e-94 349.4 232 72.8
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.4e-93 346.7 222 74.3
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 2.4e-93 345.9 233 71.7
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.2e-92 343.6 233 76.0
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.0e-91 340.5 232 72.4
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.3e-91 340.1 224 72.8
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 3.8e-91 338.6 252 66.7
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 3.8e-91 338.6 240 72.5
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 6.5e-91 337.8 304 59.5
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.1e-89 332.8 232 72.0
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 6.1e-89 331.3 232 73.7
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 8.8e-88 327.4 187 85.0
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 1.2e-87 327.0 318 56.6
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 4.4e-87 325.1 229 68.6
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 5.7e-87 324.7 223 67.3
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 9.1e-85 317.4 231 68.4
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.3e-83 312.8 192 78.1
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 5.0e-83 311.6 232 66.4
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 6.5e-83 311.2 232 65.9
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 5.5e-82 308.1 217 65.9
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 3.6e-81 305.4 187 77.5
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 3.6e-81 305.4 218 65.6
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 4.7e-81 305.1 217 64.1
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 8.0e-81 304.3 193 76.2
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.8e-80 303.1 198 75.8
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 1.3e-78 297.0 237 66.2
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 6.0e-68 261.5 168 75.6
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.0e-67 260.8 197 64.5
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 3.0e-67 259.2 154 83.8
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.2e-65 253.8 223 58.7
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 6.2e-57 224.9 150 69.3
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 1.5e-55 220.3 219 51.1
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 3.1e-40 169.5 119 64.7
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 4.9e-38 162.2 105 78.1
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 1.2e-36 157.5 190 39.5
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 7.1e-29 131.7 104 67.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 4.8e-25 119.0 205 33.7
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 6.9e-08 62.0 72 40.3
Ah.14g084710 Amaranthus hybridus HOM05D005951 ORTHO05D007025 6.5e-06 55.5 39 69.2


User provided reference genes

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