Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.2e-131 472.2 231 100.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-130 469.9 231 99.1
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.2e-130 468.4 231 98.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 6.3e-118 427.6 231 89.2
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 2.1e-81 306.2 231 63.2
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 7.8e-76 287.7 212 59.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 6.6e-75 284.6 219 58.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 5.6e-74 281.6 195 62.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.2e-73 280.4 220 59.1
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 4.7e-73 278.5 212 58.5
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.1e-73 278.1 214 57.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 8.0e-73 277.7 206 58.7
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.8e-72 276.6 205 62.9
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 5.2e-72 275.0 198 61.1
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.5e-71 273.5 213 55.9
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.0e-71 273.1 214 59.3
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.4e-71 272.3 207 59.4
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 4.4e-71 271.9 212 54.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 4.4e-71 271.9 227 53.3
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 7.5e-71 271.2 212 59.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 9.8e-71 270.8 198 60.6
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.3e-70 270.4 202 61.9
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.2e-70 269.6 199 57.8
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.9e-70 268.5 215 54.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.4e-69 266.9 215 54.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.9e-69 266.5 202 58.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.9e-69 266.5 204 59.8
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.9e-69 266.5 213 55.9
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 3.2e-69 265.8 214 58.9
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.2e-69 265.8 202 59.9
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.6e-68 263.5 226 50.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.6e-68 263.5 216 54.2
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.6e-68 263.5 201 57.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.5e-68 262.3 211 54.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.6e-68 261.9 221 58.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.6e-68 261.9 214 56.1
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 6.0e-68 261.5 213 56.3
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.0e-67 260.8 219 55.3
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-67 260.4 214 53.7
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.3e-67 260.4 182 63.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.3e-67 259.6 202 59.4
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.3e-67 259.6 192 60.9
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.1e-66 257.3 221 55.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.1e-66 257.3 208 55.3
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.1e-66 257.3 225 53.8
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 5.6e-66 255.0 201 55.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 7.3e-66 254.6 204 58.8
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-65 253.8 214 55.1
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.8e-65 252.7 220 52.7
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.8e-65 252.7 233 51.1
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.6e-65 252.3 220 53.2
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.7e-65 251.9 231 53.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.2e-65 251.5 235 51.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.1e-64 250.8 214 54.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.4e-64 250.4 209 56.9
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.1e-64 249.2 197 57.4
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.1e-64 249.2 237 50.6
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-63 247.3 221 54.3
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.2e-63 247.3 213 51.6
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.2e-63 247.3 221 52.5
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 2.0e-63 246.5 195 56.9
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 2.0e-63 246.5 190 56.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.4e-63 245.4 203 53.7
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 9.8e-63 244.2 204 54.9
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 9.8e-63 244.2 206 53.9
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.2e-62 243.0 209 50.2
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.4e-62 241.5 214 55.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.9e-61 240.0 209 49.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 5.4e-61 238.4 225 46.7
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 5.4e-61 238.4 206 53.9
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-60 236.9 225 47.6
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-60 236.9 225 47.6
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.1e-60 236.5 197 53.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.7e-60 236.1 225 49.3
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.6e-60 235.3 224 47.8
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.6e-60 235.3 214 50.9
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 7.8e-60 234.6 210 50.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-59 233.8 209 47.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 2.3e-59 233.0 185 57.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.0e-59 232.6 223 47.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.0e-59 232.6 223 47.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.9e-59 232.3 225 47.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.1e-59 231.9 224 46.0
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.1e-59 231.9 232 51.3
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.6e-59 231.5 218 49.5
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 8.6e-59 231.1 225 45.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.5e-58 230.3 225 44.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-58 230.3 225 48.9
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.9e-58 229.9 226 46.9
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.5e-58 229.6 203 54.2
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 3.3e-58 229.2 225 44.4
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 7.3e-58 228.0 211 48.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 9.5e-58 227.6 224 45.1
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 9.5e-58 227.6 224 45.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 9.5e-58 227.6 208 51.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-57 227.3 224 44.6
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.1e-57 226.5 225 44.9
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.8e-57 226.1 194 52.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.1e-56 224.2 178 56.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.1e-56 224.2 201 52.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.4e-56 223.8 208 51.0
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.8e-56 223.4 199 52.3
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 8.9e-56 221.1 214 50.5
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.2e-54 216.5 197 49.2
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.9e-54 216.1 193 51.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 6.4e-54 214.9 191 52.4
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.4e-53 213.8 187 48.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 7.1e-53 211.5 250 41.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.1e-52 209.9 230 49.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.7e-52 209.5 197 48.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 4.6e-52 208.8 205 50.2
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 7.8e-52 208.0 165 53.3
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 4.3e-50 202.2 169 56.2
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 7.3e-50 201.4 177 52.0
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 9.5e-50 201.1 178 52.2
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.8e-49 199.5 185 46.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 6.8e-48 194.9 133 63.2
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 6.8e-48 194.9 229 40.2
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.4e-47 192.6 234 41.9
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 4.6e-44 182.2 183 42.1
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.8e-44 181.4 214 43.5
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-43 180.6 203 44.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.3e-43 180.6 129 54.3
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.1e-43 178.7 250 43.2
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 3.3e-42 176.0 238 40.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.0e-39 166.8 207 40.1
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 3.8e-38 162.5 191 40.3
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.1e-36 156.8 108 62.0
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 6.6e-35 151.8 143 55.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 2.8e-33 146.4 108 59.3
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 2.4e-29 133.3 181 37.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.3e-26 122.9 92 53.3
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.2e-22 110.2 108 45.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.7e-19 98.6 87 47.1
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.3e-17 94.4 99 50.5
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-14 84.0 61 55.7
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 4.9e-14 82.4 52 59.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.9e-14 82.4 58 60.3
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 8.4e-14 81.6 92 43.5
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.1e-13 81.3 102 48.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.1e-13 81.3 83 48.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.1e-12 77.0 63 47.6
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.1e-12 77.0 71 52.1
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-11 74.3 63 46.0
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.3e-11 74.3 84 47.6
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.2e-09 67.0 76 46.1
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.8e-09 66.6 131 29.8
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.0e-06 58.2 31 64.5
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.2e-06 57.0 45 48.9
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.9e-06 56.6 49 51.0
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.8e-06 56.2 53 45.3
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.8e-06 56.2 45 48.9
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 6.5e-06 55.5 40 65.0


User provided reference genes

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