Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-96 356.3 192 100.0
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 6.0e-90 334.3 192 94.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 3.3e-88 328.6 193 93.8
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 6.2e-87 324.3 193 92.2
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 4.3e-80 301.6 188 85.1
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 4.3e-80 301.6 187 85.6
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 4.3e-80 301.6 187 85.0
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.1e-78 297.0 186 83.9
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-78 297.0 190 82.6
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.0e-78 295.0 193 83.9
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 9.0e-78 293.9 186 82.3
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 9.0e-78 293.9 195 81.5
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 9.0e-78 293.9 192 81.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.0e-77 292.7 189 81.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.5e-77 291.6 191 83.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 9.9e-77 290.4 187 81.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.3e-76 290.0 185 82.7
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.9e-76 288.9 186 81.7
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.9e-76 288.9 191 80.6
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 3.8e-76 288.5 196 79.6
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 6.4e-76 287.7 181 83.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.4e-76 287.7 191 80.6
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 8.4e-76 287.3 192 80.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 8.4e-76 287.3 195 80.0
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-75 287.0 189 79.9
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-75 287.0 189 79.9
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 197 78.2
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-75 286.2 189 79.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.9e-75 286.2 185 81.1
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-75 286.2 192 80.2
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.9e-75 286.2 177 84.2
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.4e-75 285.8 189 80.4
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.4e-75 285.8 192 79.7
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.4e-75 285.8 190 80.5
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.4e-75 285.8 185 81.6
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.5e-75 284.6 191 77.5
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 7.1e-75 284.3 189 78.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 197 77.7
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.6e-74 283.1 197 77.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 186 80.6
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.1e-74 282.7 180 81.1
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.1e-74 282.7 193 78.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.1e-74 282.7 191 79.6
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 2.7e-74 282.3 201 77.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 4.6e-74 281.6 194 78.4
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 7.9e-74 280.8 187 78.1
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 7.9e-74 280.8 190 80.0
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.3e-73 280.0 181 80.1
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.3e-73 280.0 178 81.5
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.3e-73 280.0 183 79.2
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.3e-73 280.0 191 78.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.3e-73 279.3 189 77.2
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.0e-73 278.9 182 78.6
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 3.9e-73 278.5 193 78.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.1e-73 278.1 187 77.5
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 6.7e-73 277.7 197 76.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 6.7e-73 277.7 184 79.3
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.1e-72 276.9 187 77.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.3e-72 275.4 191 78.0
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 4.3e-72 275.0 192 77.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 4.3e-72 275.0 187 75.9
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.3e-72 275.0 198 75.3
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 4.3e-72 275.0 191 78.0
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.6e-72 274.6 184 78.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 5.6e-72 274.6 187 76.5
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.6e-72 274.6 192 77.6
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 7.4e-72 274.2 189 76.7
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.3e-71 273.5 191 78.0
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.1e-71 272.7 189 78.8
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.1e-71 272.7 191 77.0
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.1e-71 272.7 192 77.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.1e-71 272.7 189 76.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.8e-71 272.3 196 76.0
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 3.7e-71 271.9 192 77.6
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.8e-71 271.6 182 78.6
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 4.8e-71 271.6 177 79.1
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 6.2e-71 271.2 177 79.1
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 8.2e-71 270.8 192 75.5
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.1e-70 270.4 191 76.4
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.1e-70 270.4 187 74.9
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.1e-70 270.4 187 74.9
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.4e-70 270.0 191 74.9
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.4e-70 270.0 191 74.9
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.8e-70 269.6 192 75.0
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.4e-70 269.2 182 78.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.4e-70 269.2 205 70.2
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.1e-70 268.9 191 74.3
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.1e-70 268.9 189 76.7
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.1e-70 268.9 187 78.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 6.9e-70 267.7 187 76.5
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 6.9e-70 267.7 186 74.7
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 6.9e-70 267.7 193 74.6
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.9e-70 267.7 191 74.3
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 6.9e-70 267.7 193 74.6
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 6.9e-70 267.7 193 74.6
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 6.9e-70 267.7 193 74.6
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.2e-69 266.9 186 74.2
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.0e-69 266.2 187 76.5
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.5e-69 265.0 183 74.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 7.6e-69 264.2 196 74.5
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.0e-68 263.8 181 75.7
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.2e-68 262.7 222 65.8
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.1e-67 260.4 227 64.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.4e-67 260.0 200 71.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 3.2e-67 258.8 188 72.3
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 5.5e-67 258.1 237 63.3
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.2e-66 256.9 231 62.8
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-66 256.1 200 70.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.3e-65 252.7 154 86.4
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.5e-64 250.0 159 81.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.6e-63 246.5 162 80.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.8e-62 243.0 190 70.0
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.4e-62 242.7 251 57.0
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 4.5e-61 238.4 189 70.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 3.2e-59 232.3 141 83.7
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 5.5e-59 231.5 188 63.8
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 3.0e-57 225.7 171 67.3
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.9e-56 223.0 145 80.7
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-56 222.6 192 66.7
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.8e-55 219.2 183 62.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.4e-54 216.9 132 83.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.4e-54 216.9 130 83.8
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.5e-53 213.4 130 83.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 4.2e-51 205.3 171 61.4
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.7e-50 202.6 135 77.8
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 6.1e-50 201.4 173 56.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.6e-48 196.1 125 81.6
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.7e-48 194.9 125 80.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 5.3e-46 188.3 138 73.2
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.0e-45 186.4 132 78.0
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.2e-44 183.0 110 85.5
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 8.5e-44 181.0 211 55.5
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.1e-40 170.6 131 67.2
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.1e-38 161.0 109 77.1
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 9.1e-38 161.0 101 82.2
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-37 160.2 102 78.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.0e-36 157.5 113 75.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.2e-33 145.2 93 77.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.7e-32 141.7 102 78.4
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-30 137.1 93 80.6
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 3.1e-30 136.0 178 43.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 4.1e-30 135.6 92 81.5
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 5.3e-30 135.2 171 42.1
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.5e-29 132.5 163 41.7
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.5e-29 132.1 81 81.5
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.3e-28 130.6 100 70.0
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-26 124.0 93 69.9
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 8.0e-26 121.3 104 64.4
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 6.8e-25 118.2 75 80.0
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.5e-24 117.1 184 38.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.0e-24 116.7 100 57.0
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 2.6e-24 116.3 99 67.7
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.0e-17 92.4 63 71.4
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.1e-14 82.4 53 73.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.9e-12 76.3 111 48.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 5.0e-12 75.5 46 80.4
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.6e-12 74.7 111 47.7
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.6e-12 74.7 111 47.7
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.3e-11 72.8 111 46.8
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.3e-11 72.4 111 46.8
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 7.3e-11 71.6 46 84.8
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 7.5e-08 61.6 113 43.4
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.0e-06 55.1 36 72.2


User provided reference genes

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