Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.6e-281 972.2 527 100.0
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 3.2e-258 894.8 527 93.2
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 4.1e-181 638.6 481 74.2
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.3e-181 638.3 506 71.5
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 4.5e-180 635.2 531 68.9
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.2e-179 632.9 467 74.9
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.1e-178 630.6 529 68.1
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 7.2e-178 627.9 420 80.2
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 7.2e-178 627.9 532 68.2
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.1e-177 626.3 498 70.3
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 6.1e-177 624.8 469 72.7
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 3.0e-176 622.5 528 67.6
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.8e-176 620.9 532 67.3
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.5e-175 620.2 527 67.7
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.5e-175 620.2 531 67.2
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.6e-175 619.4 528 68.2
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 3.4e-175 619.0 521 67.0
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 7.5e-175 617.8 463 71.9
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.3e-174 617.1 462 72.3
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.3e-174 617.1 444 75.7
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 2.2e-174 616.3 476 72.3
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 2.2e-174 616.3 525 67.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.2e-174 616.3 530 66.4
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.7e-174 615.5 525 65.5
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 3.7e-174 615.5 509 68.0
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.7e-174 615.5 467 73.9
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 6.3e-174 614.8 516 68.6
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 8.3e-174 614.4 444 76.1
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 1.1e-173 614.0 458 73.4
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.4e-173 613.6 527 66.0
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.4e-173 613.6 461 72.5
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-173 613.6 516 68.4
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.4e-173 613.6 424 77.6
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.4e-173 613.6 479 70.6
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 1.4e-173 613.6 495 69.9
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.4e-173 613.6 470 70.6
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.8e-173 613.2 526 66.5
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.4e-173 612.8 523 66.3
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.1e-173 612.5 527 65.8
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 3.1e-173 612.5 464 71.8
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 3.1e-173 612.5 449 73.5
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 4.1e-173 612.1 485 69.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 5.3e-173 611.7 523 66.3
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.3e-173 611.7 533 66.2
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 9.1e-173 610.9 461 72.2
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 9.1e-173 610.9 417 77.7
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.2e-172 610.5 480 70.0
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.6e-172 610.1 459 72.5
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 1.6e-172 610.1 497 68.6
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 1.6e-172 610.1 417 79.1
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.0e-172 609.8 460 72.4
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.7e-172 609.4 484 69.6
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 2.7e-172 609.4 490 70.6
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 3.5e-172 609.0 430 76.7
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 4.5e-172 608.6 456 72.6
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 5.9e-172 608.2 459 73.6
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 7.7e-172 607.8 443 74.0
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.3e-171 607.1 506 68.0
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.7e-171 606.7 532 66.5
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 3.8e-171 605.5 417 78.7
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 5.0e-171 605.1 530 65.5
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.1e-170 604.0 419 78.5
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 1.1e-170 604.0 516 66.5
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.1e-170 604.0 464 71.8
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 1.5e-170 603.6 415 78.1
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 1.5e-170 603.6 424 78.1
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.5e-170 602.8 417 77.0
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.5e-170 602.8 533 65.1
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 3.2e-170 602.4 430 74.0
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 5.5e-170 601.7 417 77.5
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 5.5e-170 601.7 423 75.7
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 7.2e-170 601.3 482 68.3
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 9.4e-170 600.9 525 64.2
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 9.4e-170 600.9 514 67.7
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.6e-169 600.1 417 76.7
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 2.1e-169 599.7 529 64.8
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 2.1e-169 599.7 515 68.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 2.1e-169 599.7 515 68.0
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 6.1e-169 598.2 461 71.6
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 8.0e-169 597.8 541 64.3
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.4e-168 597.0 493 68.8
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.4e-168 597.0 480 69.2
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.8e-168 596.7 517 64.6
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 4.0e-168 595.5 439 73.1
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 5.2e-168 595.1 437 73.2
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 8.8e-168 594.3 502 66.9
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 5.7e-167 591.7 403 77.7
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 9.8e-167 590.9 464 69.6
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.3e-166 590.5 439 72.9
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.4e-165 587.0 531 63.5
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 1.4e-165 587.0 412 77.7
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.1e-165 585.5 432 74.1
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 9.1e-165 584.3 405 77.5
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.2e-164 583.9 418 74.2
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.2e-164 583.9 423 75.2
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.6e-164 583.6 464 69.2
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 7.7e-164 581.3 474 69.0
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.0e-163 580.9 418 76.8
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.7e-163 580.1 448 69.6
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 2.9e-163 579.3 500 65.2
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 3.8e-163 578.9 417 74.1
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 6.6e-163 578.2 441 71.9
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 9.5e-162 574.3 490 66.5
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 2.1e-161 573.2 421 73.2
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 4.7e-161 572.0 417 73.6
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.4e-160 570.5 431 71.0
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 8.9e-160 567.8 434 71.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 3.4e-159 565.8 417 72.9
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 1.8e-152 543.5 421 68.4
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.7e-150 537.0 432 69.2
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 3.1e-144 516.2 417 69.8
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.4e-141 507.3 464 62.9
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.5e-138 497.3 457 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 7.3e-138 495.0 443 60.0
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 2.8e-137 493.0 420 62.9
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 2.8e-137 493.0 420 62.9
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.0e-131 474.6 419 61.1
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 3.3e-130 469.5 420 61.2
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.4e-120 436.8 341 72.4
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 7.1e-117 425.2 367 62.1
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 8.1e-105 385.2 309 66.7
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.3e-102 377.9 337 62.0
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.1e-97 360.5 430 48.6
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 9.3e-93 345.1 227 82.4
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 2.2e-78 297.4 418 43.8
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.5e-77 293.9 414 44.9
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 5.0e-70 269.6 181 82.3
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 9.4e-69 265.4 229 61.1
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 5.2e-67 259.6 384 38.8
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 9.7e-66 255.4 378 47.6
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 6.3e-65 252.7 505 34.5
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 5.3e-64 249.6 155 86.5
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 9.1e-64 248.8 196 69.4
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.2e-58 231.9 379 36.1
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.5e-53 214.2 453 36.0
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 5.2e-51 206.5 162 66.0
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 3.9e-38 163.7 279 41.9
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.0e-34 151.4 126 60.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 4.1e-32 143.7 149 57.7
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.5e-29 134.4 175 49.1
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 1.4e-27 128.6 129 54.3
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 9.2e-24 115.9 86 67.4
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 3.9e-22 110.5 97 68.0
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.7e-14 85.1 405 23.5
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.0e-14 84.3 83 56.6
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.0e-11 73.9 67 65.7
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 3.8e-09 67.4 422 23.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 4.6e-07 60.5 349 26.4


User provided reference genes

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