Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 7.9e-177 623.6 307 100.0
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 6.8e-136 487.6 365 72.3
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.1e-96 357.5 297 62.6
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.3e-88 328.6 304 57.6
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 2.6e-87 326.2 323 53.9
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 3.8e-86 322.4 310 54.8
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.4e-85 320.5 297 57.9
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 2.1e-84 316.6 327 52.3
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.3e-83 313.9 314 54.5
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 3.0e-83 312.8 333 51.4
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 3.9e-83 312.4 310 54.5
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 2.5e-82 309.7 311 51.8
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.3e-81 307.4 314 51.9
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.6e-81 307.0 336 50.3
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 8.1e-81 304.7 297 55.2
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.1e-80 304.3 285 57.9
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 1.8e-80 303.5 330 51.2
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.1e-80 302.8 317 53.0
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.1e-80 302.8 311 54.7
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.2e-79 300.8 317 52.7
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 3.4e-79 299.3 317 51.7
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 7.6e-79 298.1 330 49.7
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.7e-78 297.0 311 51.1
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 2.2e-78 296.6 325 49.5
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.2e-78 296.6 306 52.3
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 2.2e-78 296.6 318 51.3
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 4.9e-78 295.4 313 51.1
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 4.9e-78 295.4 325 50.2
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 8.4e-78 294.7 308 51.6
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.1e-77 294.3 316 50.9
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.4e-77 293.9 315 50.8
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 1.9e-77 293.5 325 50.2
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.2e-77 292.7 297 52.5
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.5e-77 292.0 339 49.3
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.5e-77 292.0 297 52.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 7.1e-77 291.6 311 49.8
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.2e-76 290.8 318 50.9
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 3.5e-76 289.3 316 50.3
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 4.6e-76 288.9 335 48.7
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.6e-76 288.9 341 48.4
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 1.0e-75 287.7 324 49.4
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.0e-75 287.7 311 49.2
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.3e-75 287.3 297 52.2
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.8e-75 287.0 362 46.7
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 3.9e-75 285.8 342 46.8
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 8.7e-75 284.6 296 51.4
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 8.7e-75 284.6 347 47.3
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 8.7e-75 284.6 306 51.0
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 8.7e-75 284.6 322 48.4
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.5e-74 283.9 321 49.2
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.9e-74 283.5 313 49.8
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.3e-73 280.8 351 45.3
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.6e-73 280.4 358 46.4
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 2.8e-73 279.6 360 44.2
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 3.7e-73 279.3 378 43.1
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 8.2e-73 278.1 326 47.2
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 8.2e-73 278.1 355 46.5
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 5.3e-72 275.4 342 45.0
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 9.0e-72 274.6 330 46.7
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.2e-71 274.2 333 46.5
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 2.0e-71 273.5 321 46.7
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 2.9e-70 269.6 326 47.9
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 5.0e-70 268.9 314 49.7
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.5e-70 268.5 356 42.4
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 8.5e-70 268.1 340 45.0
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.1e-69 267.7 310 48.1
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.9e-69 266.9 331 46.8
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.5e-69 266.5 324 46.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.5e-69 266.5 321 45.8
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 7.2e-69 265.0 329 46.5
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 9.3e-69 264.6 318 45.6
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 1.6e-68 263.8 324 46.9
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 2.1e-68 263.5 323 45.8
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.6e-68 262.3 329 45.3
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 7.9e-68 261.5 330 45.5
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.3e-67 260.0 297 49.5
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.1e-66 257.7 319 47.0
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.5e-66 257.3 339 43.1
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.9e-66 256.9 254 55.5
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 2.5e-66 256.5 347 43.8
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 5.7e-66 255.4 264 52.7
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.3e-65 254.2 339 42.8
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 4.8e-65 252.3 339 42.5
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 3.1e-64 249.6 304 46.7
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 5.3e-64 248.8 311 45.3
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.2e-63 247.7 344 43.0
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 1.2e-63 247.7 307 46.6
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.5e-63 247.3 317 44.2
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 5.9e-63 245.4 313 43.8
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 7.7e-63 245.0 343 42.0
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.0e-62 244.6 344 42.4
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.0e-62 244.6 344 42.4
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.0e-62 244.6 344 42.4
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 1.7e-62 243.8 343 41.7
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 2.2e-62 243.4 344 42.4
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 2.2e-62 243.4 328 43.6
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 8.5e-62 241.5 285 47.4
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.9e-61 240.4 325 43.7
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 7.2e-61 238.4 377 39.0
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 1.6e-60 237.3 349 40.4
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 6.1e-60 235.3 349 40.7
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 7.9e-60 235.0 382 38.2
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.5e-58 230.7 315 41.6
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 2.2e-57 226.9 300 43.7
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 2.0e-55 220.3 340 40.6
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 2.9e-54 216.5 332 40.1
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.9e-51 206.1 333 38.7
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.8e-48 197.2 300 39.7
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 9.4e-45 184.9 321 36.4
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 8.0e-44 181.8 202 49.5
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.4e-43 181.0 331 37.8
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 2.4e-40 170.2 133 62.4
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 2.0e-39 167.2 278 36.7
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 3.0e-35 153.3 388 29.6
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.0e-34 150.6 294 34.4
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.8e-33 146.7 295 34.2
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 1.1e-32 144.8 191 42.9
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 6.5e-30 135.6 127 52.8
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 8.0e-28 128.6 137 48.9
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.1e-24 118.2 166 41.6
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.6e-20 103.2 291 30.6
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 4.0e-19 99.8 304 27.3
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.8e-19 99.0 114 45.6
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 9.8e-18 95.1 130 44.6
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.9e-14 83.2 216 32.9
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 1.5e-10 71.2 51 62.7
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.3e-09 68.2 55 58.2
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 1.0e-06 58.5 90 37.8
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 3.0e-06 57.0 164 32.3
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 5.0e-06 56.2 126 34.9
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 5.0e-06 56.2 126 34.1
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 6.6e-06 55.8 161 30.4


User provided reference genes

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