Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 8.9e-257 889.8 461 100.0
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.1e-249 866.3 461 96.5
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.8e-111 407.1 465 49.5
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.8e-111 407.1 466 49.4
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.5e-110 404.1 473 49.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 5.6e-110 402.1 465 49.5
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 2.8e-109 399.8 466 48.9
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.1e-108 396.4 466 51.1
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 3.2e-105 386.3 466 49.8
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 4.2e-105 386.0 464 50.4
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.3e-101 374.4 470 46.2
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 6.2e-101 372.1 466 46.4
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.6e-99 366.7 471 45.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 5.8e-99 365.5 465 45.4
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 3.5e-96 356.3 466 45.5
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 3.0e-95 353.2 462 44.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 5.1e-95 352.4 464 45.3
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.5e-94 350.9 464 45.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.5e-94 350.9 466 44.0
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 2.8e-93 346.7 464 43.8
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 8.2e-93 345.1 466 44.6
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.1e-92 344.7 477 43.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 5.3e-92 342.4 412 48.1
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 9.0e-92 341.7 466 42.7
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.6e-91 340.1 467 42.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 2.6e-91 340.1 429 47.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.6e-91 340.1 469 43.7
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.7e-90 337.4 466 45.3
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 6.5e-90 335.5 466 44.2
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.1e-89 334.7 464 42.7
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.9e-89 334.0 471 43.5
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.5e-89 333.6 464 42.7
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 6.1e-88 328.9 464 43.3
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.8e-87 327.4 467 43.0
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 3.9e-87 326.2 467 42.6
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.5e-86 324.3 461 42.3
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 2.5e-86 323.6 473 43.1
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.3e-85 321.2 463 42.3
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.3e-85 321.2 458 42.6
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.3e-85 321.2 461 43.6
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.8e-85 320.1 458 42.4
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 2.4e-84 317.0 458 42.4
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.1e-84 316.2 466 43.1
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 9.1e-84 315.1 466 42.3
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 2.0e-83 313.9 466 42.7
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 2.0e-83 313.9 470 42.6
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.4e-83 313.2 458 41.7
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.9e-82 310.1 462 40.7
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.9e-82 310.1 468 42.3
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 8.5e-82 308.5 466 41.8
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.9e-81 307.4 506 39.3
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.5e-81 307.0 469 42.9
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 2.5e-81 307.0 464 42.0
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 7.2e-81 305.4 462 40.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.2e-80 304.7 473 40.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.7e-80 303.5 479 40.5
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 4.6e-80 302.8 469 42.4
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 7.9e-80 302.0 467 41.8
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.4e-79 301.2 469 41.6
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.4e-79 301.2 459 39.2
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.3e-79 300.4 412 44.4
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 3.9e-79 299.7 431 41.5
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.1e-79 299.3 460 39.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.1e-79 299.3 459 41.4
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 1.5e-78 297.7 466 40.6
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 5.7e-78 295.8 465 42.2
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 9.7e-78 295.0 468 41.2
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.3e-77 294.7 475 40.4
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.3e-77 294.7 475 40.4
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.7e-77 294.3 465 41.5
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.2e-77 293.9 467 41.3
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 8.2e-77 292.0 469 40.5
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.1e-76 291.6 467 40.5
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.8e-76 290.8 467 42.4
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.1e-76 289.7 471 39.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.5e-75 287.7 468 41.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 2.0e-75 287.3 470 39.6
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 3.4e-75 286.6 404 43.6
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.4e-75 286.6 469 40.3
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 5.9e-75 285.8 468 41.0
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 1.3e-74 284.6 459 39.2
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 2.2e-74 283.9 431 41.3
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.9e-74 283.5 466 40.3
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 3.8e-74 283.1 466 40.6
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 5.0e-74 282.7 473 38.5
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.4e-73 281.2 470 40.4
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 7.2e-73 278.9 466 40.1
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.4e-73 278.5 439 40.5
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.7e-72 276.9 470 40.0
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 4.7e-72 276.2 467 39.4
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 6.7e-71 272.3 427 41.0
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.7e-71 272.3 459 37.3
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 3.3e-70 270.0 415 39.3
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 4.8e-69 266.2 429 40.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 6.3e-69 265.8 467 36.8
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.1e-68 265.0 470 38.7
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.0e-67 260.8 211 64.0
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 7.7e-67 258.8 457 38.3
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 6.5e-66 255.8 451 38.1
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 4.2e-65 253.1 466 37.6
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.2e-64 251.5 431 39.9
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.6e-64 251.1 459 37.9
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.6e-64 251.1 467 37.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 3.6e-64 250.0 469 37.1
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.1e-64 249.2 458 38.0
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.3e-63 247.3 467 36.8
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.0e-63 246.9 466 37.8
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 9.7e-62 241.9 358 41.1
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.3e-61 241.5 377 41.4
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 6.5e-58 229.2 411 36.7
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 5.7e-54 216.1 354 41.2
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.8e-53 213.0 413 35.4
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 3.2e-49 200.3 163 63.2
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 9.5e-49 198.7 377 38.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.4e-47 194.9 460 32.6
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 2.7e-43 180.6 458 31.2
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 9.5e-41 172.2 491 30.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 1.4e-39 168.3 470 30.0
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 6.4e-37 159.5 270 37.4
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.2e-35 155.2 242 41.7
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.5e-33 147.5 461 31.5
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.8e-32 144.1 442 30.3
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.2e-32 142.9 502 27.3
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 9.8e-30 135.6 380 30.8
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.3e-29 135.2 438 29.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.9e-29 134.0 452 29.6
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 7.0e-28 129.4 220 37.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 7.8e-27 125.9 460 28.0
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.5e-25 120.9 462 26.6
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-24 117.1 503 27.6
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.1e-23 115.5 177 39.0
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.5e-17 95.1 171 32.7
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.5e-17 95.1 157 40.1
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-17 94.7 88 51.1
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.1e-11 74.7 74 51.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.2e-08 65.5 63 46.0
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 2.8e-08 64.3 96 40.6
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.4e-07 61.2 81 48.1
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 9.0e-07 59.3 78 43.6


User provided reference genes

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