Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 1.0e-154 550.1 289 100.0
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 2.4e-151 538.9 289 97.9
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.1e-85 318.5 301 60.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.7e-84 315.1 303 61.4
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.7e-78 296.2 291 58.8
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.8e-77 293.5 299 57.9
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.5e-73 279.3 304 56.2
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.0e-72 277.7 300 56.3
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.4e-71 273.9 301 54.2
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.5e-71 273.1 300 53.3
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 2.7e-70 269.6 305 53.1
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.3e-68 262.7 319 50.5
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 7.4e-68 261.5 344 49.1
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.7e-67 260.4 322 51.9
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 4.8e-67 258.8 319 50.8
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 4.8e-67 258.8 296 50.7
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 4.8e-67 258.8 294 51.4
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 8.2e-67 258.1 307 49.5
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.4e-66 257.3 304 51.6
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 9.1e-66 254.6 299 52.2
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 4.5e-65 252.3 322 53.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.5e-65 252.3 320 50.3
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.7e-64 250.4 298 50.7
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.2e-64 250.0 293 54.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 2.2e-64 250.0 339 47.5
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 3.8e-64 249.2 297 48.5
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.5e-64 248.4 295 51.5
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 6.5e-64 248.4 273 56.4
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 6.5e-64 248.4 303 48.5
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 6.5e-64 248.4 297 51.5
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.1e-63 247.7 301 49.8
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 1.9e-63 246.9 298 48.3
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 2.5e-63 246.5 303 52.1
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 7.2e-63 245.0 295 50.8
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 9.4e-63 244.6 303 48.5
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.2e-62 244.2 299 48.8
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.1e-62 243.4 301 49.5
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 2.7e-62 243.0 330 45.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 6.1e-62 241.9 322 49.1
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 6.1e-62 241.9 292 49.0
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 6.1e-62 241.9 316 49.7
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 8.0e-62 241.5 296 47.6
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.3e-61 240.0 303 48.8
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 3.0e-61 239.6 326 47.5
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 4.0e-61 239.2 301 51.8
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.0e-61 239.2 306 48.0
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 8.8e-61 238.0 305 47.9
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 8.8e-61 238.0 309 46.6
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 8.8e-61 238.0 296 49.0
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 2.0e-60 236.9 309 46.3
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 2.6e-60 236.5 309 46.3
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.4e-60 236.1 307 46.6
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 7.5e-60 235.0 306 49.3
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 9.7e-60 234.6 308 49.0
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.3e-59 234.2 299 47.8
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.3e-59 234.2 326 44.5
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 1.3e-59 234.2 290 49.0
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 2.8e-59 233.0 304 50.0
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 2.8e-59 233.0 296 48.3
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.8e-59 232.3 293 47.4
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 6.3e-59 231.9 308 45.1
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 8.3e-59 231.5 296 48.3
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 4.1e-58 229.2 286 52.8
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 4.1e-58 229.2 304 47.4
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 5.3e-58 228.8 293 47.1
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 9.1e-58 228.0 362 43.4
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 1.2e-57 227.6 312 45.5
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.0e-57 226.9 299 48.2
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 3.5e-57 226.1 302 46.7
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.5e-57 226.1 298 47.3
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 4.5e-57 225.7 297 47.1
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 5.9e-57 225.3 297 45.8
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 5.9e-57 225.3 294 47.6
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 1.0e-56 224.6 295 47.5
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.3e-56 224.2 282 47.2
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.7e-56 223.8 296 47.3
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 2.9e-56 223.0 305 47.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 2.9e-56 223.0 304 47.0
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.9e-56 223.0 218 57.3
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.0e-56 222.2 294 48.0
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 5.0e-56 222.2 341 41.6
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 6.5e-56 221.9 249 51.8
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 5.5e-55 218.8 315 43.8
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.2e-54 217.6 304 45.4
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 1.6e-54 217.2 307 44.6
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 1.0e-53 214.5 308 44.8
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 1.0e-53 214.5 289 46.4
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.0e-53 214.5 291 46.0
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.8e-53 213.8 310 45.8
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.8e-53 213.8 294 44.6
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 8.8e-53 211.5 310 43.2
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 1.5e-52 210.7 291 45.4
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.6e-52 209.9 294 46.9
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.6e-52 209.9 298 46.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.4e-52 209.1 307 42.7
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 5.7e-52 208.8 313 43.5
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.7e-51 207.2 306 41.8
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 3.7e-51 206.1 242 50.4
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 4.8e-51 205.7 316 42.4
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 6.3e-51 205.3 298 45.0
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-50 203.8 223 52.9
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 2.4e-50 203.4 312 43.6
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 5.4e-50 202.2 309 43.0
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 7.0e-50 201.8 319 45.1
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 7.0e-50 201.8 319 45.1
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 7.0e-50 201.8 319 45.1
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 9.1e-50 201.4 303 44.9
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 9.1e-50 201.4 310 43.9
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.0e-49 200.3 229 49.3
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 2.0e-49 200.3 290 43.4
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.0e-49 200.3 298 42.6
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.7e-49 199.9 302 44.7
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 2.3e-48 196.8 360 38.3
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 2.3e-48 196.8 317 42.9
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 6.6e-48 195.3 314 44.6
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 6.6e-48 195.3 302 44.4
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 6.6e-48 195.3 302 44.4
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.9e-47 193.7 214 53.3
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 3.3e-47 193.0 264 47.0
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 5.5e-47 192.2 307 43.6
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 5.5e-47 192.2 307 43.6
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 2.1e-46 190.3 296 44.9
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 2.0e-44 183.7 306 42.5
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.6e-44 183.3 313 40.3
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 4.4e-44 182.6 241 42.3
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.9e-43 179.1 151 68.9
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 3.2e-42 176.4 292 43.2
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-39 166.8 308 40.9
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 2.1e-38 163.7 323 33.7
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.8e-37 158.7 317 36.6
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 1.5e-36 157.5 162 58.0
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 2.3e-32 143.7 270 37.8
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.0e-29 132.9 362 32.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.2e-29 132.5 360 31.1
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.4e-26 124.4 91 68.1
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 2.1e-25 120.6 199 42.7
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 2.7e-25 120.2 155 48.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.7e-24 117.5 349 32.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.0e-24 116.7 378 28.8
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.5e-23 114.4 334 31.1
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 3.3e-23 113.2 302 34.8
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 3.3e-23 113.2 302 34.8
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-23 113.2 356 31.5
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.2e-22 109.0 373 26.8
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.3e-19 101.3 336 27.1
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 9.2e-18 95.1 131 46.6
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 1.3e-16 91.3 125 46.4
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 2.8e-14 83.6 158 36.1
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.2e-13 79.3 187 33.2
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 7.6e-12 75.5 253 30.8
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.8e-11 73.2 139 36.0
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.3e-10 68.6 322 27.0
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.6e-09 66.2 52 67.3
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.0e-09 65.9 143 34.3
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.3e-08 64.7 59 61.0
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.1e-07 61.6 42 69.0
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.1e-07 61.6 255 26.3
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.6e-07 58.5 219 29.7
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 4.8e-06 56.2 190 30.0
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.8e-06 56.2 104 36.5
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.8e-06 56.2 104 36.5
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 4.8e-06 56.2 74 41.9


User provided reference genes

Program Settings