Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 3.0e-102 375.2 189 100.0
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.3e-97 359.8 192 95.8
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 2.1e-55 219.5 195 63.1
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 2.8e-55 219.2 192 63.0
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 3.6e-55 218.8 192 61.5
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 2.3e-54 216.1 192 58.9
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 5.2e-54 214.9 184 63.6
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.5e-53 213.4 183 62.3
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 2.6e-53 212.6 195 59.0
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 9.9e-53 210.7 192 59.4
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 1.3e-52 210.3 191 61.3
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 3.7e-52 208.8 189 60.8
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 6.4e-52 208.0 180 62.2
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.1e-51 207.2 192 58.9
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 1.1e-51 207.2 192 58.9
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 1.9e-51 206.5 184 59.2
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 7.1e-51 204.5 199 57.3
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 2.1e-50 203.0 184 60.3
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 2.3e-49 199.5 193 58.0
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 3.0e-49 199.1 187 59.9
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 5.1e-49 198.4 193 57.5
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.5e-48 196.8 190 56.8
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 7.3e-48 194.5 192 56.8
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 1.2e-47 193.7 183 55.2
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 6.2e-47 191.4 197 54.8
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 6.2e-47 191.4 206 54.9
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 1.4e-46 190.3 192 55.2
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 5.2e-46 188.3 181 55.2
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 4.4e-45 185.3 194 52.6
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 9.9e-45 184.1 184 53.8
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 9.9e-45 184.1 192 56.2
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 1.3e-44 183.7 184 56.0
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 2.2e-44 183.0 184 54.3
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 2.9e-44 182.6 184 54.9
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 4.9e-44 181.8 187 57.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 6.4e-44 181.4 192 55.7
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 8.4e-44 181.0 194 53.1
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 8.4e-44 181.0 181 54.1
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 1.9e-43 179.9 184 52.7
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 2.4e-43 179.5 198 53.0
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 3.2e-43 179.1 185 55.1
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 4.2e-43 178.7 204 52.9
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 4.2e-43 178.7 184 52.7
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 4.2e-43 178.7 184 54.9
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 1.2e-42 177.2 192 56.2
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 2.1e-42 176.4 192 54.7
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 2.7e-42 176.0 182 52.2
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 1.0e-41 174.1 182 53.8
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 1.7e-41 173.3 189 50.3
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 3.0e-41 172.6 191 51.3
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 3.9e-41 172.2 187 50.3
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.5e-40 170.2 157 59.9
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.9e-40 169.9 146 59.6
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 9.6e-40 167.5 162 54.9
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 1.2e-39 167.2 187 49.7
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 2.8e-39 166.0 180 48.3
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 3.6e-39 165.6 180 48.9
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 6.2e-39 164.9 176 52.3
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 3.1e-38 162.5 188 48.4
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 2.0e-37 159.8 186 50.0
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 4.4e-37 158.7 185 52.4
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 7.6e-37 157.9 185 52.4
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 2.4e-35 152.9 143 54.5
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 1.2e-34 150.6 191 46.6
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 7.8e-34 147.9 199 46.2
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 1.3e-33 147.1 168 48.2
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 3.9e-33 145.6 192 46.4
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 1.5e-32 143.7 192 44.8
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 7.3e-32 141.4 120 61.7
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 1.3e-31 140.6 184 44.0
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 6.2e-31 138.3 191 44.5
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 6.9e-30 134.8 174 46.6
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 9.0e-30 134.4 193 43.0
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 9.0e-30 134.4 193 44.0
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 9.0e-30 134.4 193 43.0
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 9.0e-30 134.4 193 44.0
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 9.0e-30 134.4 193 44.0
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 5.8e-29 131.7 192 41.7
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 9.9e-29 131.0 194 43.8
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 4.9e-28 128.6 191 42.4
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 2.4e-27 126.3 189 42.3
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 5.3e-22 108.6 171 45.0
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 5.3e-22 108.6 111 53.2
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 6.7e-17 91.7 169 36.1
TWI75G1431 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 3.0e-09 66.2 178 25.8
Potri.008G061400 Populus trichocarpa HOM05D000180 ORTHO05D000099 1.9e-08 63.5 99 39.4
TAR628G0454 Trochodendron aralioides HOM05D000180 ORTHO05D000099 5.7e-08 62.0 99 38.4
Manes.04G077600 Manihot esculenta HOM05D000180 ORTHO05D000099 1.3e-07 60.8 167 31.1
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.7e-07 59.3 99 39.4
ATR0810G039 Amborella trichopoda HOM05D000180 ORTHO05D000099 4.8e-07 58.9 85 43.5
Cc02_g35990 Coffea canephora HOM05D000180 ORTHO05D000099 6.3e-07 58.5 99 38.4
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 8.2e-07 58.2 98 36.7
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 1.1e-06 57.8 86 38.4
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.1e-06 57.8 86 38.4
Gohir.A04G131000 Gossypium hirsutum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 110 32.7
Gohir.A07G036000 Gossypium hirsutum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 95 36.8
FvH4_3g44751 Fragaria vesca HOM05D000180 ORTHO05D000099 1.4e-06 57.4 128 32.0
Gohir.A04G122300 Gossypium hirsutum HOM05D000180 ORTHO05D000099 1.4e-06 57.4 120 31.7
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.4e-06 57.4 116 31.0
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.8e-06 57.0 86 36.0
TPR.G20457 Trifolium pratense HOM05D000180 ORTHO05D000099 1.8e-06 57.0 106 34.0
MSTRG.18525 Avicennia marina HOM05D000180 ORTHO05D000099 2.4e-06 56.6 101 33.7
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.4e-06 56.6 86 36.0
Lalb_Chr04g0251071 Lupinus albus HOM05D000180 ORTHO05D000099 2.4e-06 56.6 101 36.6
Lalb_Chr10g0107461 Lupinus albus HOM05D000180 ORTHO05D000099 2.4e-06 56.6 101 35.6
RcHm_v2.0_Chr2g0158861 Rosa chinensis HOM05D000180 ORTHO05D000099 2.4e-06 56.6 86 40.7
RcHm_v2.0_Chr5g0081441 Rosa chinensis HOM05D000180 ORTHO05D000099 2.4e-06 56.6 100 35.0
Duzib132G0699 Durio zibethinus HOM05D000180 ORTHO05D000099 3.1e-06 56.2 127 29.9
FvH4_6g42930 Fragaria vesca HOM05D000180 ORTHO05D000099 3.1e-06 56.2 87 36.8
FAN14G4538 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.1e-06 56.2 87 36.8
Gohir.D04G164300 Gossypium hirsutum HOM05D000180 ORTHO05D000099 3.1e-06 56.2 101 34.7
Gohir.D04G164400 Gossypium hirsutum HOM05D000180 ORTHO05D000099 3.1e-06 56.2 101 34.7
Gorai.012G152500 Gossypium raimondii HOM05D000180 ORTHO05D000099 3.1e-06 56.2 101 34.7
Gorai.012G152700 Gossypium raimondii HOM05D000180 ORTHO05D000099 3.1e-06 56.2 101 34.7
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 4.1e-06 55.8 79 35.4
Hund06413 Selenicereus undatus HOM05D001736 ORTHO05D000099 4.1e-06 55.8 174 28.2
Gohir.A05G290980 Gossypium hirsutum HOM05D000180 ORTHO05D000099 5.3e-06 55.5 82 40.2
RcHm_v2.0_Chr5g0081451 Rosa chinensis HOM05D000180 ORTHO05D000099 5.3e-06 55.5 127 31.5
Sabra08G0045100 Salix brachista HOM05D000064 ORTHO05D000099 5.3e-06 55.5 108 33.3
BcaC05g26195 Brassica carinata HOM05D000180 ORTHO05D000099 6.9e-06 55.1 103 38.8
C05p22000 Brassica napus HOM05D000180 ORTHO05D000099 6.9e-06 55.1 103 38.8
CiPaw.05G078800 Carya illinoinensis HOM05D000180 ORTHO05D000099 6.9e-06 55.1 85 34.1
Cc04_g12500 Coffea canephora HOM05D000180 ORTHO05D000099 6.9e-06 55.1 157 31.2
FAN05G0464 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.9e-06 55.1 87 35.6
FAN21G0286 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.9e-06 55.1 128 31.2
Glyma.04G139800 Glycine max HOM05D000180 ORTHO05D000099 6.9e-06 55.1 107 29.9
Gorai.012G155700 Gossypium raimondii HOM05D000180 ORTHO05D000099 6.9e-06 55.1 101 33.7
MD11G1012500 Malus domestica HOM05D000180 ORTHO05D000099 6.9e-06 55.1 122 34.4
Os11g0464600 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 6.9e-06 55.1 99 32.3
PSO541G1921 Papaver somniferum HOM05D000180 ORTHO05D000099 6.9e-06 55.1 94 36.2
TAR376G1129 Trochodendron aralioides HOM05D000180 ORTHO05D000099 6.9e-06 55.1 106 31.1
CiPaw.13G010600 Carya illinoinensis HOM05D000180 ORTHO05D000099 9.0e-06 54.7 120 30.0
CiPaw.14G073200 Carya illinoinensis HOM05D000970 ORTHO05D000788 9.0e-06 54.7 110 30.9
Gohir.D11G307300 Gossypium hirsutum HOM05D000180 ORTHO05D000099 9.0e-06 54.7 111 32.4
Gorai.007G337700 Gossypium raimondii HOM05D000180 ORTHO05D000099 9.0e-06 54.7 111 32.4
Medtr3g105630 Medicago truncatula HOM05D000180 ORTHO05D000099 9.0e-06 54.7 101 34.7
RcHm_v2.0_Chr1g0319651 Rosa chinensis HOM05D000180 ORTHO05D000099 9.0e-06 54.7 121 26.4
SGA_v2.0_scaffold58G20420 Striga asiatica HOM05D000180 ORTHO05D000099 9.0e-06 54.7 94 35.1
THA.LOC104819119 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 9.0e-06 54.7 110 33.6


User provided reference genes

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