Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 1.1e-51 206.5 112 100.0
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 3.8e-12 75.1 58 69.0
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 8.5e-12 73.9 61 65.6
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 1.9e-11 72.8 59 62.7
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 2.5e-11 72.4 71 54.9
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 5.5e-11 71.2 68 57.4
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 5.5e-11 71.2 58 67.2
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 9.4e-11 70.5 59 64.4
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 9.4e-11 70.5 59 61.0
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 9.4e-11 70.5 58 63.8
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 1.2e-10 70.1 61 60.7
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 1.2e-10 70.1 65 56.9
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 1.6e-10 69.7 82 52.4
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 1.6e-10 69.7 58 65.5
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 2.1e-10 69.3 59 57.6
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 2.1e-10 69.3 59 59.3
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 2.1e-10 69.3 58 60.3
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 2.1e-10 69.3 71 60.6
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 2.7e-10 68.9 58 67.2
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 3.6e-10 68.6 62 61.3
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 3.6e-10 68.6 58 63.8
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 3.6e-10 68.6 60 60.0
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 3.6e-10 68.6 82 50.0
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 3.6e-10 68.6 71 59.2
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 4.7e-10 68.2 58 63.8
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 4.7e-10 68.2 61 59.0
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 4.7e-10 68.2 58 62.1
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 4.7e-10 68.2 86 45.3
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 6.1e-10 67.8 58 63.8
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 8.0e-10 67.4 58 62.1
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 8.0e-10 67.4 58 62.1
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 8.0e-10 67.4 58 62.1
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 8.0e-10 67.4 71 52.1
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.0e-09 67.0 82 48.8
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.0e-09 67.0 64 59.4
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.0e-09 67.0 82 50.0
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 1.0e-09 67.0 58 63.8
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 1.0e-09 67.0 58 58.6
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 1.8e-09 66.2 58 60.3
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 2.3e-09 65.9 68 52.9
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 2.3e-09 65.9 57 64.9
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 2.3e-09 65.9 88 44.3
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 3.0e-09 65.5 61 55.7
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 3.0e-09 65.5 59 57.6
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 3.0e-09 65.5 71 50.7
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 3.0e-09 65.5 58 62.1
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 3.0e-09 65.5 88 44.3
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 3.0e-09 65.5 58 56.9
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 3.0e-09 65.5 78 47.4
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 4.0e-09 65.1 59 57.6
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 4.0e-09 65.1 59 57.6
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 4.0e-09 65.1 74 52.7
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 5.2e-09 64.7 55 61.8
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 5.2e-09 64.7 60 60.0
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 5.2e-09 64.7 59 55.9
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 5.2e-09 64.7 84 46.4
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.2e-08 63.5 55 60.0
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.5e-08 63.2 69 53.6
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.5e-08 63.2 69 52.2
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.5e-08 63.2 63 55.6
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 1.5e-08 63.2 58 56.9
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 1.5e-08 63.2 72 48.6
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 2.0e-08 62.8 61 54.1
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 2.6e-08 62.4 63 54.0
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 2.6e-08 62.4 58 55.2
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 2.6e-08 62.4 58 55.2
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 3.4e-08 62.0 65 56.9
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 3.4e-08 62.0 58 58.6
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 4.4e-08 61.6 70 50.0
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-08 61.6 59 54.2
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 5.7e-08 61.2 58 58.6
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 5.7e-08 61.2 59 55.9
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 5.7e-08 61.2 59 55.9
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 5.7e-08 61.2 58 55.2
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 7.5e-08 60.8 71 47.9
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 7.5e-08 60.8 54 57.4
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 9.8e-08 60.5 58 55.2
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 9.8e-08 60.5 82 46.3
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 1.7e-07 59.7 58 51.7
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.7e-07 59.7 76 48.7
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 2.2e-07 59.3 71 50.7
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 2.2e-07 59.3 67 49.3
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-07 59.3 72 41.7
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 2.8e-07 58.9 79 45.6
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 2.8e-07 58.9 71 47.9
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 3.7e-07 58.5 58 51.7
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 3.7e-07 58.5 72 44.4
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 3.7e-07 58.5 84 45.2
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 6.3e-07 57.8 62 53.2
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 6.3e-07 57.8 58 53.4
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 8.3e-07 57.4 58 53.4
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 1.1e-06 57.0 57 54.4
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 2.4e-06 55.8 55 52.7
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 5.4e-06 54.7 58 48.3


User provided reference genes

Program Settings