Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 0.0e+00 1917.9 1008 100.0
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 0.0e+00 1617.4 1033 84.5
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 4.1e-145 520.0 1056 38.4
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 6.9e-129 466.1 1084 35.8
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 4.7e-125 453.4 1074 35.1
PSO731G0067 Papaver somniferum HOM05D006788 ORTHO05D008265 7.0e-113 412.9 266 86.1
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.3e-111 408.7 1110 34.3
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.2e-107 395.6 1098 33.2
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 1.4e-105 388.7 1102 32.9
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 9.4e-102 375.9 1106 33.5
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.6e-99 367.9 1109 31.2
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 8.3e-98 362.8 1086 32.3
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 9.2e-97 359.4 1089 30.6
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.7e-96 357.8 1097 31.3
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 1.0e-95 355.9 1099 32.0
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.7e-95 355.1 1099 31.7
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.8e-95 354.0 1096 31.8
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 1.1e-94 352.4 1094 30.5
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.5e-94 351.3 1099 32.3
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 5.6e-94 350.1 1109 32.3
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 5.6e-94 350.1 1107 31.7
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 7.3e-94 349.7 1110 30.3
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.2e-93 349.0 1103 31.4
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 3.6e-93 347.4 1050 32.2
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 1.0e-92 345.9 1074 32.2
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.4e-92 345.5 1117 31.5
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.3e-92 344.7 1067 30.9
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 6.8e-92 343.2 1116 30.8
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.9e-92 342.8 1114 30.5
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.7e-91 340.1 1116 30.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 5.7e-91 340.1 1090 30.4
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 6.4e-90 336.7 1099 30.1
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.7e-88 331.3 1104 31.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 7.8e-88 329.7 1053 30.3
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 3.9e-87 327.4 1111 31.0
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.9e-86 325.1 1070 32.1
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.9e-86 325.1 1036 31.3
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 4.3e-86 323.9 1035 30.1
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 5.2e-84 317.0 1084 31.1
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 8.9e-84 316.2 1083 29.8
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.5e-83 315.5 1071 30.9
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 3.2e-81 307.8 1119 29.1
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 8.1e-77 293.1 1066 30.3
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.8e-76 292.0 1080 28.6
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 2.6e-75 288.1 1088 28.9
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.7e-74 285.4 1088 29.4
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 3.2e-73 281.2 1075 28.7
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 7.1e-73 280.0 1037 31.3
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 3.5e-72 277.7 1126 29.7
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 7.8e-72 276.6 1057 29.0
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 7.8e-72 276.6 1023 28.7
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 1.7e-71 275.4 1122 29.8
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 3.0e-71 274.6 1068 28.7
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 3.0e-71 274.6 1133 29.4
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 5.6e-70 270.4 1044 29.3
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.6e-70 270.4 1057 29.7
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.8e-69 268.1 1063 29.6
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.8e-68 265.4 1045 29.2
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 4.9e-66 257.3 1055 29.1
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.2e-65 254.6 746 33.8
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.7e-64 251.5 926 31.7
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.3e-63 248.4 1064 27.8
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 3.0e-63 248.1 1065 27.8
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.3e-62 244.6 1069 27.5
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 7.3e-62 243.4 1088 27.2
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 4.7e-61 240.7 1058 29.1
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.1e-60 238.0 1077 27.5
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 4.0e-60 237.7 1033 27.6
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 2.9e-58 231.5 1088 27.8
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 1.9e-57 228.8 1108 27.1
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 7.1e-57 226.9 1085 27.0
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 9.3e-57 226.5 1046 27.1
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 3.5e-56 224.6 1085 27.2
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 6.6e-55 220.3 1014 26.1
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.5e-54 219.2 1013 28.3
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.6e-53 215.7 1034 26.5
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 6.2e-53 213.8 1014 25.5
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 1.1e-52 213.0 1015 27.1
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 1.8e-52 212.2 1014 27.0
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.4e-52 211.8 1013 26.9
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.4e-52 211.8 1015 27.2
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 9.0e-52 209.9 904 27.0
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 2.6e-51 208.4 1014 26.9
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.6e-51 208.4 1027 27.3
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 2.9e-50 204.9 1023 26.9
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 4.9e-50 204.1 1020 26.6
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 1.4e-49 202.6 1025 25.5
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 3.2e-49 201.4 1216 24.8
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.6e-48 199.1 635 32.0
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 2.1e-48 198.7 1019 26.2
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 2.1e-48 198.7 1027 26.5
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 4.6e-48 197.6 1015 25.3
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.3e-47 195.3 1021 27.0
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.3e-45 189.5 681 29.7
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 6.9e-44 183.7 1043 25.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 1.5e-43 182.6 1015 25.0
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.6e-43 181.8 447 34.7
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.4e-43 181.4 1029 25.6
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 4.2e-41 174.5 1014 24.9
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.2e-40 172.9 595 33.6
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 2.1e-37 162.2 1033 25.0
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 1.2e-32 146.4 222 38.3
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.8e-31 142.5 206 40.3
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.3e-29 136.3 1009 24.6
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 9.0e-28 130.2 834 26.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.2e-25 121.3 916 25.2
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 4.2e-25 121.3 361 33.0
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 9.7e-22 110.2 1056 22.7
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.4e-20 105.5 178 38.2
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 5.3e-20 104.4 123 42.3
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 9.1e-20 103.6 251 33.5
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 3.8e-18 98.2 1063 23.2
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.9e-17 95.9 915 22.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 6.3e-13 80.9 859 23.3
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 8.2e-13 80.5 173 33.5
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.4e-12 79.7 865 23.8
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.8e-12 79.3 872 23.1
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 1.5e-11 76.3 881 23.3
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.4e-11 75.1 911 23.5
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 7.7e-11 73.9 942 22.5
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 8.5e-10 70.5 906 21.3
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.1e-09 70.1 874 22.1
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.9e-09 69.3 890 22.2
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.9e-09 69.3 936 21.9
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.2e-09 68.2 896 21.7
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 7.2e-09 67.4 208 30.3
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 7.2e-09 67.4 678 24.3
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 9.4e-09 67.0 268 26.9
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 9.4e-09 67.0 222 31.1
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 9.4e-09 67.0 879 22.9
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.6e-08 66.2 876 23.6
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 1.6e-08 66.2 913 22.7
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.1e-08 65.9 168 29.8
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.1e-08 65.9 863 23.1
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 2.7e-08 65.5 873 22.8
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.6e-08 65.1 890 22.1
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 3.6e-08 65.1 902 22.2
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.4e-07 63.2 168 29.8
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.8e-07 62.8 167 29.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 2.3e-07 62.4 119 35.3
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 3.9e-07 61.6 884 22.2
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.2e-07 61.2 908 21.0
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 5.2e-07 61.2 926 22.4
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 6.7e-07 60.8 928 22.2
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 8.8e-07 60.5 72 44.4
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.1e-06 60.1 209 30.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.1e-06 60.1 390 25.9
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.5e-06 59.7 906 22.2
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.5e-06 59.7 916 20.7
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 3.3e-06 58.5 853 22.2
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 3.3e-06 58.5 867 23.1
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 3.3e-06 58.5 171 29.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.4e-06 58.2 164 29.9
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 7.4e-06 57.4 902 21.6


User provided reference genes

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