Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 3.0e-90 336.3 174 100.0
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.1e-89 334.3 174 99.4
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.8e-74 283.9 174 81.6
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 3.9e-74 282.7 174 81.6
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 7.4e-73 278.5 172 82.0
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 7.4e-73 278.5 172 82.0
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.6e-72 277.3 175 81.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.6e-72 277.3 172 82.6
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 2.1e-72 276.9 173 82.7
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 8.2e-72 275.0 174 79.9
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 1.1e-71 274.6 173 80.3
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.1e-71 274.6 174 80.5
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 5.3e-71 272.3 173 78.6
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 6.9e-71 271.9 173 81.5
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.5e-70 270.8 174 79.9
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.5e-70 270.8 174 79.9
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.4e-70 269.6 174 79.9
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 3.4e-70 269.6 172 79.7
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 4.5e-70 269.2 175 78.9
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 4.5e-70 269.2 174 79.3
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.8e-70 268.9 172 77.9
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.0e-69 268.1 174 78.7
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 1.0e-69 268.1 169 79.3
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.0e-69 268.1 172 80.8
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.3e-69 267.7 168 79.8
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.3e-69 267.7 169 80.5
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.3e-69 267.7 174 78.7
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.7e-69 267.3 173 79.2
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.2e-69 266.9 172 79.1
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.2e-69 266.9 174 77.6
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.9e-69 266.5 172 79.1
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 2.9e-69 266.5 174 78.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.9e-69 266.5 174 78.2
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 3.8e-69 266.2 174 77.6
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 3.8e-69 266.2 173 78.0
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 4.9e-69 265.8 168 79.8
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 6.5e-69 265.4 168 79.2
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 6.5e-69 265.4 174 78.7
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 8.4e-69 265.0 174 78.2
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 8.4e-69 265.0 174 78.2
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.1e-68 264.6 170 79.4
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.4e-68 264.2 174 78.2
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 1.9e-68 263.8 174 78.2
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 4.2e-68 262.7 174 78.2
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 5.5e-68 262.3 170 77.1
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 7.1e-68 261.9 172 78.5
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.2e-67 261.2 174 76.4
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.1e-67 260.4 170 79.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.1e-67 260.4 170 79.4
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 6.0e-67 258.8 172 77.9
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 7.9e-67 258.5 174 73.6
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.0e-66 258.1 172 77.9
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.3e-66 257.7 172 76.7
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 6.7e-66 255.4 167 77.2
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.1e-65 254.6 174 74.7
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 4.3e-65 252.7 172 75.0
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 5.7e-65 252.3 172 76.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.6e-64 250.8 169 76.3
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 2.8e-64 250.0 174 72.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 4.8e-64 249.2 206 67.0
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 6.3e-64 248.8 173 72.3
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.1e-63 248.1 172 74.4
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.4e-63 247.7 170 72.9
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.8e-63 247.3 170 72.9
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.8e-63 247.3 170 72.9
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.8e-63 247.3 170 72.9
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.8e-63 247.3 170 72.9
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.8e-63 247.3 170 72.9
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 2.4e-63 246.9 172 75.6
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 1.2e-62 244.6 174 73.6
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.2e-62 244.6 170 72.9
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.3e-61 241.1 172 72.7
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.7e-61 240.7 170 71.8
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.7e-61 240.7 170 71.8
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.2e-61 240.4 201 63.2
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.2e-61 240.4 167 74.3
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 6.5e-61 238.8 172 72.1
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 1.1e-60 238.0 169 72.8
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 5.5e-60 235.7 166 70.5
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.3e-60 235.0 221 60.6
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 6.1e-59 232.3 174 69.0
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 7.9e-59 231.9 158 73.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.5e-57 227.6 150 78.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 2.8e-56 223.4 203 62.6
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 4.8e-56 222.6 149 78.5
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.4e-55 221.1 198 60.6
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 5.3e-55 219.2 166 66.3
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 5.9e-54 215.7 169 67.5
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.0e-53 214.9 156 72.4
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 8.5e-53 211.8 193 62.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 3.2e-52 209.9 169 64.5
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 7.2e-52 208.8 167 62.3
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 4.7e-51 206.1 152 72.4
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 6.1e-51 205.7 150 71.3
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 4.8e-48 196.1 170 59.4
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 8.2e-48 195.3 149 67.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.2e-43 181.4 131 69.5
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.4e-41 172.9 118 77.1
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 3.7e-32 143.3 72 87.5
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 9.4e-28 128.6 108 65.7
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.1e-27 127.5 108 65.7
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.1e-27 127.5 65 87.7
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 5.2e-26 122.9 70 78.6
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 8.8e-26 122.1 93 76.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.4e-23 114.0 97 61.9
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 7.0e-23 112.5 124 54.0
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 2.7e-22 110.5 71 64.8
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 7.7e-22 109.0 176 36.9
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.0e-21 108.6 163 39.3
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 7.5e-17 92.4 78 71.8
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 2.8e-16 90.5 69 75.4
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.3e-16 89.4 78 69.2
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.4e-15 88.2 89 61.8
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 7.8e-14 82.4 67 64.2
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.0e-10 72.0 51 80.4
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.2e-10 69.7 64 60.9
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.5e-09 68.2 40 85.0
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 1.3e-08 65.1 64 62.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.1e-07 62.0 32 75.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 7.0e-07 59.3 48 66.7


User provided reference genes

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