Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 3.3e-164 581.6 294 100.0
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 6.5e-112 407.9 308 72.4
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 3.0e-80 302.8 275 56.7
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.1e-78 294.7 306 53.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.8e-77 291.6 306 52.9
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 7.6e-76 288.1 304 51.0
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 6.4e-75 285.0 291 52.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 4.1e-74 282.3 306 50.0
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 7.1e-74 281.6 292 51.4
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.2e-73 280.8 307 52.4
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.7e-73 279.6 300 51.0
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.0e-72 277.7 301 49.2
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 8.6e-72 274.6 292 50.3
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 3.3e-71 272.7 304 49.3
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 3.3e-71 272.7 292 51.7
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 4.3e-71 272.3 298 49.7
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 7.3e-71 271.6 280 51.4
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.8e-70 269.6 295 50.8
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 6.9e-69 265.0 285 51.9
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 6.9e-69 265.0 296 51.4
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.4e-68 262.7 293 49.8
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.4e-68 262.7 293 49.8
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 7.6e-68 261.5 294 50.3
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.7e-67 260.4 269 52.8
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.7e-67 260.4 309 47.2
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.9e-67 259.6 306 47.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 8.4e-67 258.1 293 49.1
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 8.4e-67 258.1 299 48.8
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.1e-66 257.7 309 48.2
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.4e-66 257.3 294 49.0
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 3.2e-66 256.1 299 48.2
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.2e-66 256.1 301 48.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 5.4e-66 255.4 296 48.3
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 9.3e-66 254.6 314 47.8
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.2e-65 254.2 306 47.4
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 1.6e-65 253.8 291 48.8
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.1e-65 253.4 296 49.3
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.5e-65 252.7 279 49.5
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 7.8e-65 251.5 277 50.9
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.0e-64 251.1 306 48.4
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 3.0e-64 249.6 291 49.5
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 3.9e-64 249.2 271 49.8
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 5.1e-64 248.8 285 49.5
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 1.5e-63 247.3 301 47.2
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.9e-63 246.9 307 46.6
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.9e-63 246.9 277 46.9
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.5e-63 246.5 299 46.8
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 5.6e-63 245.4 365 43.6
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.6e-62 243.8 294 47.6
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.8e-62 243.0 293 44.4
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 4.8e-62 242.3 312 45.2
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.9e-61 238.4 283 45.2
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.5e-60 237.3 299 44.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.5e-60 237.3 309 46.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.0e-60 236.9 299 44.8
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 2.6e-60 236.5 313 44.7
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 3.4e-60 236.1 303 43.6
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 3.4e-60 236.1 291 48.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 5.8e-60 235.3 305 45.6
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.3e-59 234.2 273 46.5
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.3e-59 234.2 289 47.1
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.7e-59 233.8 298 44.0
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.2e-59 233.4 289 47.1
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.2e-59 233.4 261 49.8
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 3.8e-59 232.6 289 46.0
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 3.8e-59 232.6 271 46.9
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 3.8e-59 232.6 272 45.6
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.9e-59 232.3 304 44.1
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.4e-58 230.7 273 46.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.4e-58 229.9 307 43.3
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.4e-58 229.9 312 44.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 9.3e-58 228.0 272 44.5
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 9.3e-58 228.0 306 45.8
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.2e-57 227.6 224 53.6
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.6e-57 227.3 285 47.4
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.3e-56 224.2 272 43.0
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 1.3e-56 224.2 309 44.0
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.8e-56 223.8 257 49.4
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 6.7e-56 221.9 291 46.7
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.1e-55 221.1 255 49.0
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.5e-55 220.7 285 43.9
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.9e-55 220.3 297 40.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.3e-55 219.5 283 44.2
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.8e-53 213.8 290 42.4
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 6.9e-53 211.8 273 46.2
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.9e-51 206.5 284 43.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.8e-51 206.1 268 43.3
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 5.5e-50 202.2 318 37.1
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 6.0e-49 198.7 267 44.9
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.0e-49 198.7 262 48.1
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 3.9e-48 196.1 297 41.4
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.5e-47 194.1 298 40.6
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.3e-47 192.6 298 40.6
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 5.6e-47 192.2 297 40.7
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 9.6e-47 191.4 258 46.1
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 9.0e-45 184.9 299 37.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 4.5e-44 182.6 269 40.1
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.5e-44 182.6 226 45.1
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 4.9e-43 179.1 269 40.9
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.1e-42 177.9 307 37.8
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 1.2e-41 174.5 295 38.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 2.3e-40 170.2 199 52.3
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 3.3e-39 166.4 193 51.8
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 4.1e-37 159.5 186 45.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.0e-36 157.1 256 38.7
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.5e-31 140.2 226 35.8
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 4.3e-31 139.4 183 44.3
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 5.9e-28 129.0 138 50.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 5.5e-26 122.5 276 34.1
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 5.5e-26 122.5 260 35.4
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 3.3e-23 113.2 155 40.6
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 6.3e-22 109.0 109 54.1
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 1.2e-20 104.8 167 37.7
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 3.6e-17 93.2 180 34.4
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 2.0e-15 87.4 163 34.4
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 9.7e-15 85.1 160 35.0
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 9.7e-15 85.1 209 31.1
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.7e-14 83.2 134 35.1
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 8.2e-14 82.0 133 36.1
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-13 81.6 125 39.2
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.1e-13 79.7 86 47.7
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 9.1e-13 78.6 226 27.4
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.6e-12 77.0 197 31.0
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.3e-11 74.7 66 57.6
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 3.2e-10 70.1 59 52.5
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-09 67.8 130 34.6
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 2.1e-09 67.4 167 31.7
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.1e-09 67.4 44 65.9
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.6e-07 60.5 54 63.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-07 59.7 156 28.8
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-07 59.7 156 28.8
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 5.7e-07 59.3 167 29.9
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 9.7e-07 58.5 105 36.2
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 8.2e-06 55.5 68 41.2
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 8.2e-06 55.5 68 41.2


User provided reference genes

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