Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.6e-259 899.0 508 100.0
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 1.3e-253 879.4 508 98.4
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 6.5e-176 621.3 514 69.1
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 6.1e-174 614.8 495 70.5
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 6.1e-174 614.8 514 67.3
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 8.8e-173 610.9 514 66.5
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 2.4e-170 602.8 528 65.3
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 7.0e-170 601.3 496 66.5
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 9.1e-170 600.9 485 67.2
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 3.8e-168 595.5 499 68.9
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.9e-167 593.2 481 69.6
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 8.0e-166 587.8 485 66.0
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 8.0e-166 587.8 490 70.4
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 2.4e-162 576.2 486 66.5
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 3.5e-161 572.4 472 70.3
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.1e-159 567.4 527 65.5
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 9.4e-159 564.3 490 68.0
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 9.4e-159 564.3 501 63.3
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 2.7e-158 562.8 519 61.8
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 2.7e-158 562.8 520 61.9
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 1.4e-157 560.5 483 68.5
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.3e-157 559.7 471 64.8
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 2.6e-156 556.2 462 66.0
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 2.6e-156 556.2 506 63.8
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 7.5e-156 554.7 518 59.8
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 9.8e-156 554.3 494 64.0
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 2.4e-154 549.7 465 67.1
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.2e-153 547.4 523 62.0
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 4.5e-153 545.4 608 55.6
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 4.5e-153 545.4 521 63.3
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.0e-152 544.3 506 64.6
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 1.7e-152 543.5 506 64.6
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 8.6e-152 541.2 492 65.4
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 2.5e-151 539.7 513 59.8
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.3e-151 539.3 469 63.5
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 4.2e-151 538.9 517 60.5
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 7.2e-151 538.1 518 57.5
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.2e-150 537.3 511 61.6
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 2.8e-150 536.2 519 58.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.6e-150 535.8 513 59.5
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 4.7e-150 535.4 523 62.3
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.8e-149 533.5 512 59.8
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 3.0e-149 532.7 511 61.4
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 3.0e-149 532.7 463 68.5
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 3.0e-149 532.7 522 60.7
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 6.8e-149 531.6 515 59.6
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 2.0e-148 530.0 406 69.7
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 2.0e-148 530.0 479 60.3
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 3.4e-148 529.3 410 70.0
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 5.7e-148 528.5 471 63.5
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.7e-147 526.9 509 60.5
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 8.3e-147 524.6 482 61.0
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 4.5e-145 518.8 514 62.1
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.7e-144 516.9 475 64.0
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.5e-143 513.8 510 58.6
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 9.5e-143 511.1 510 61.0
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 1.6e-142 510.4 517 59.2
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 1.6e-142 510.4 517 59.2
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 2.1e-142 510.0 512 57.4
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 4.7e-142 508.8 510 61.8
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 1.2e-140 504.2 510 57.1
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.5e-140 503.8 523 59.5
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 2.6e-140 503.1 474 60.5
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.2e-139 500.0 482 58.9
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 2.9e-139 499.6 524 60.1
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 2.9e-139 499.6 513 58.1
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 3.7e-139 499.2 530 59.2
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 3.7e-139 499.2 476 59.0
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 6.4e-139 498.4 537 57.0
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 1.1e-138 497.7 515 57.5
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.4e-138 497.3 515 57.3
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.4e-138 497.3 411 65.5
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.9e-138 496.9 474 58.6
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 4.1e-138 495.7 525 58.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 5.4e-138 495.4 471 58.8
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 7.0e-138 495.0 511 60.5
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 7.0e-138 495.0 485 62.3
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.2e-137 494.2 410 66.3
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.6e-137 493.8 408 66.9
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.7e-137 493.0 413 63.9
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.5e-137 492.7 478 60.5
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 4.6e-137 492.3 532 59.4
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 4.6e-137 492.3 511 61.1
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 1.7e-136 490.3 515 57.7
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 3.0e-136 489.6 390 72.8
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.9e-135 486.9 410 65.4
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 2.1e-134 483.4 390 65.1
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 2.1e-134 483.4 411 61.8
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 4.7e-134 482.3 557 57.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 8.0e-134 481.5 521 60.3
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.4e-133 480.7 519 54.7
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 4.4e-132 475.7 507 56.8
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 7.5e-132 474.9 450 59.8
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 2.9e-131 473.0 505 56.2
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.9e-131 472.2 479 59.7
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 3.5e-129 466.1 533 54.6
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 7.8e-129 464.9 515 55.1
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 7.8e-129 464.9 515 55.1
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.7e-128 463.8 509 55.2
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 2.3e-128 463.4 518 55.2
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 5.6e-127 458.8 406 62.3
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.2e-124 451.1 380 62.4
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.2e-124 451.1 424 60.1
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 9.2e-122 441.4 391 61.4
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.1e-121 440.3 400 63.0
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 3.3e-119 433.0 394 61.4
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 8.9e-117 424.9 364 65.9
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 2.6e-116 423.3 478 57.5
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 3.8e-115 419.5 390 59.2
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 5.3e-109 399.1 397 61.5
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.2e-108 397.9 541 46.2
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.4e-106 391.0 314 63.4
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.3e-99 367.9 530 43.0
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 3.8e-99 366.3 376 58.5
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.5e-95 354.4 532 42.9
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 9.0e-93 345.1 495 43.6
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 5.7e-87 325.9 277 66.1
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.6e-86 324.3 277 65.7
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.2e-84 318.2 289 58.8
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.8e-83 313.2 334 56.3
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 3.7e-78 296.6 503 40.2
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 6.3e-78 295.8 274 67.2
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.3e-75 288.1 367 52.3
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.9e-75 287.0 232 65.1
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 4.1e-69 266.5 295 52.9
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 1.4e-66 258.1 607 33.9
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 6.1e-57 226.1 177 67.8
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 8.8e-56 222.2 322 50.0
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 4.5e-52 209.9 474 35.0
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 7.5e-47 192.6 241 57.7
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.7e-43 181.4 150 64.7
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 9.4e-42 175.6 144 63.9
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.2e-41 175.3 159 59.7
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 7.5e-31 139.4 185 56.2
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 3.9e-27 127.1 107 60.7
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 3.9e-27 127.1 107 60.7
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 3.3e-26 124.0 104 60.6
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.3e-26 123.6 127 54.3
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.6e-26 123.2 126 53.2
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 9.5e-26 122.5 206 41.3
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 8.1e-17 92.8 97 56.7
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 1.8e-16 91.7 107 49.5
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 1.5e-15 88.6 201 40.3
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 9.8e-15 85.9 70 60.0
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.2e-14 84.7 74 58.1
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 2.1e-12 78.2 56 66.1
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 3.9e-11 73.9 111 48.6
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 6.6e-11 73.2 75 50.7
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.3e-10 70.5 153 39.9
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 1.4e-08 65.5 82 42.7
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.3e-08 64.7 152 38.2
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 7.6e-07 59.7 238 27.7
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 6.4e-06 56.6 88 46.6


User provided reference genes

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