Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 5.5e-83 310.8 149 100.0
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.4e-78 296.2 149 95.3
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.5e-27 125.9 160 48.1
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 7.3e-27 124.4 151 47.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.6e-26 122.1 138 48.6
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 6.2e-26 121.3 141 47.5
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 8.1e-26 120.9 137 50.4
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.1e-25 120.6 147 43.5
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.1e-25 120.6 141 46.8
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 1.8e-25 119.8 121 52.1
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 6.9e-25 117.9 136 43.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 6.9e-25 117.9 139 48.2
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.5e-24 116.7 146 45.2
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 2.6e-24 115.9 144 47.2
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 5.8e-24 114.8 140 47.9
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.9e-24 114.0 142 46.5
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.9e-24 114.0 136 41.9
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.3e-23 113.6 140 47.9
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.3e-23 113.6 150 42.0
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.3e-23 113.6 150 42.0
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.3e-23 113.6 137 43.1
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.7e-23 113.2 150 42.0
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.7e-23 113.2 140 42.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 2.2e-23 112.8 136 42.6
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 2.2e-23 112.8 144 45.1
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.8e-23 112.1 142 46.5
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 4.9e-23 111.7 152 42.1
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 6.4e-23 111.3 142 43.7
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.1e-22 110.5 154 46.1
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.4e-22 110.2 151 45.0
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.4e-22 110.2 142 40.8
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 2.4e-22 109.4 145 43.4
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.2e-22 109.0 136 45.6
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.2e-22 109.0 136 45.6
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 4.2e-22 108.6 141 45.4
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 5.4e-22 108.2 144 41.7
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.2e-21 107.1 146 44.5
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.2e-21 107.1 138 42.8
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 1.6e-21 106.7 143 42.7
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.6e-21 106.7 136 44.1
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.1e-21 106.3 143 40.6
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.7e-21 105.9 154 42.2
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 3.5e-21 105.5 146 44.5
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.6e-21 105.1 141 46.1
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 4.6e-21 105.1 124 49.2
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 7.8e-21 104.4 141 45.4
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 7.8e-21 104.4 141 45.4
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.0e-20 104.0 155 39.4
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.0e-20 104.0 136 42.6
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.3e-20 103.6 136 44.1
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.3e-20 103.6 141 44.7
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.3e-20 103.6 143 41.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.7e-20 103.2 141 39.7
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.7e-20 103.2 154 40.9
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 3.9e-20 102.1 146 41.1
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 5.1e-20 101.7 137 44.5
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 5.1e-20 101.7 158 41.1
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 5.1e-20 101.7 138 47.1
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 5.1e-20 101.7 138 44.2
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 5.1e-20 101.7 148 43.2
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 5.1e-20 101.7 140 42.9
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 6.6e-20 101.3 148 43.9
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.6e-20 101.3 155 40.0
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 8.7e-20 100.9 135 43.7
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.9e-19 99.8 135 43.7
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.5e-19 99.4 153 43.1
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 2.5e-19 99.4 136 41.9
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 3.3e-19 99.0 154 42.2
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 3.3e-19 99.0 150 38.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 3.3e-19 99.0 138 42.8
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.3e-19 99.0 136 39.7
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.3e-19 99.0 136 39.7
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 5.6e-19 98.2 142 43.0
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 9.6e-19 97.4 144 39.6
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 9.6e-19 97.4 147 38.8
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 1.3e-18 97.1 142 45.1
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.6e-18 96.7 144 44.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 2.1e-18 96.3 116 44.8
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.1e-18 96.3 144 43.8
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 2.8e-18 95.9 140 40.0
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.6e-18 95.5 118 48.3
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 4.8e-18 95.1 143 39.9
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 6.2e-18 94.7 120 47.5
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.1e-17 94.0 115 47.8
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.1e-17 94.0 134 39.6
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.1e-17 94.0 135 41.5
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.1e-17 94.0 135 40.7
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.8e-17 93.2 146 43.8
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.8e-17 93.2 139 41.7
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.8e-17 93.2 156 35.3
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 2.4e-17 92.8 139 41.7
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.4e-17 92.8 135 40.7
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 4.0e-17 92.0 116 45.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 5.3e-17 91.7 141 39.7
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.5e-16 90.1 157 36.9
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.5e-16 90.1 152 41.4
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 2.6e-16 89.4 142 38.7
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 7.6e-16 87.8 120 45.0
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 7.6e-16 87.8 135 42.2
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 7.6e-16 87.8 142 39.4
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 9.9e-16 87.4 121 45.5
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.3e-15 87.0 137 41.6
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.3e-15 87.0 118 43.2
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.9e-15 85.9 118 44.1
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 4.9e-15 85.1 157 38.2
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 1.1e-14 84.0 142 38.7
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.4e-14 82.8 141 39.0
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 4.2e-14 82.0 143 38.5
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 5.4e-14 81.6 135 39.3
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.4e-14 81.6 160 34.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.1e-14 81.3 163 38.7
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 9.3e-14 80.9 139 39.6
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.7e-13 79.3 136 38.2
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.0e-12 77.4 140 40.0
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.3e-12 77.0 157 35.0
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.3e-12 77.0 135 37.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.8e-12 76.6 137 38.0
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.3e-12 76.3 101 40.6
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.5e-11 73.6 135 36.3
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.5e-11 73.6 143 34.3
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.9e-11 73.2 135 37.8
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.9e-11 73.2 119 37.0
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 3.3e-11 72.4 135 37.0
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 3.3e-11 72.4 135 37.0
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 4.3e-11 72.0 135 37.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 5.6e-11 71.6 135 34.1
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.6e-11 70.9 84 48.8
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 9.6e-11 70.9 142 37.3
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 9.6e-11 70.9 151 37.7
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.3e-10 70.5 141 35.5
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.3e-10 70.5 135 36.3
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.3e-10 70.5 157 33.1
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 1.6e-10 70.1 135 36.3
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.1e-10 69.7 141 32.6
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.1e-10 69.7 157 33.1
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 2.8e-10 69.3 140 32.9
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.1e-09 67.4 137 34.3
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.1e-09 67.4 135 35.6
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.1e-09 67.4 102 42.2
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.8e-09 66.6 136 33.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.4e-09 66.2 135 31.9
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-09 65.1 126 32.5
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.9e-09 64.7 149 31.5
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 1.5e-08 63.5 140 32.1
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 1.5e-08 63.5 93 37.6
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.0e-08 63.2 137 34.3
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.4e-08 62.4 101 36.6
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.5e-08 62.0 148 30.4
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.6e-08 61.2 143 27.3
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.9e-08 60.8 160 30.6
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 2.2e-07 59.7 135 35.6
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 3.8e-07 58.9 107 39.3
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 3.8e-07 58.9 107 39.3
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 6.4e-07 58.2 39 66.7
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.4e-07 58.2 141 27.0
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-06 57.4 138 28.3
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 5.5e-06 55.1 106 34.0
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 5.5e-06 55.1 164 28.7
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 7.1e-06 54.7 44 59.1
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 9.3e-06 54.3 70 44.3


User provided reference genes

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