Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 4.0e-204 714.5 358 100.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 8.0e-197 690.3 353 98.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.9e-137 493.0 295 84.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.3e-108 395.2 360 58.9
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.2e-105 385.6 357 57.4
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 8.8e-103 377.9 366 56.0
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 8.3e-101 371.3 359 54.6
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 3.5e-99 365.9 369 54.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.5e-97 359.8 369 54.2
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.5e-97 359.8 373 52.3
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 7.2e-97 358.2 360 54.4
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 8.0e-96 354.8 373 50.4
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.4e-95 354.0 359 52.4
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.8e-95 353.6 373 50.7
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.0e-94 350.1 357 53.2
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.0e-94 350.1 357 53.2
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.3e-93 347.4 356 53.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.3e-93 345.1 355 53.8
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.3e-93 344.7 354 54.0
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.8e-92 343.6 358 53.6
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.7e-91 339.7 356 52.8
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 8.6e-90 334.7 351 52.7
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.5e-89 333.2 358 50.3
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.1e-88 330.1 357 49.3
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 4.7e-88 328.9 356 50.3
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.0e-87 327.8 357 50.7
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.3e-87 326.6 363 49.6
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.6e-86 323.2 355 52.4
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.4e-86 322.8 364 49.7
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.4e-86 322.4 358 49.7
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.4e-86 322.4 356 50.3
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 5.8e-86 322.0 356 48.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.3e-85 320.9 354 50.3
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.3e-85 320.9 378 47.4
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.7e-85 320.5 358 51.1
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.7e-85 319.3 367 48.2
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-85 319.3 358 48.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 6.4e-85 318.5 360 50.6
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 6.4e-85 318.5 364 48.4
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 1.4e-84 317.4 363 47.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.4e-84 316.6 359 50.1
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.2e-84 316.2 361 48.2
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 4.1e-84 315.8 353 49.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.4e-84 315.5 356 48.3
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.6e-83 313.9 354 48.6
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.7e-83 313.2 380 47.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.5e-83 312.8 353 48.4
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 4.6e-83 312.4 366 49.5
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 7.8e-83 311.6 371 48.8
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.3e-82 310.1 362 47.2
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.0e-82 309.7 364 49.5
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.0e-82 309.7 360 48.9
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 5.0e-82 308.9 349 48.4
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.1e-81 307.8 351 48.1
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.1e-81 307.8 368 47.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.9e-81 307.0 369 47.4
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.9e-81 307.0 368 48.4
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.5e-81 306.6 280 56.4
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.5e-81 306.6 366 47.0
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 4.3e-81 305.8 377 46.4
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 4.3e-81 305.8 377 46.4
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 5.6e-81 305.4 364 47.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 7.3e-81 305.1 270 55.6
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.2e-80 304.3 273 55.7
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.1e-80 303.5 353 49.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.8e-80 303.1 365 45.2
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 3.6e-80 302.8 359 47.9
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.7e-80 302.4 274 56.2
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.7e-80 302.4 365 44.9
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.1e-79 301.2 360 46.4
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.3e-79 300.1 359 50.1
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 5.2e-79 298.9 353 47.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-78 297.7 361 46.8
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.2e-78 297.7 362 47.5
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.0e-78 297.0 361 47.9
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.4e-78 296.2 363 46.3
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 5.8e-78 295.4 340 48.5
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.5e-78 295.0 280 53.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-77 294.3 366 45.4
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.7e-77 293.9 268 54.9
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.9e-77 293.1 354 46.6
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.9e-77 293.1 267 56.6
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 3.7e-77 292.7 320 50.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 4.9e-77 292.4 350 46.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 8.3e-77 291.6 351 47.9
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 4.1e-76 289.3 371 47.7
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.1e-75 287.0 370 44.9
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.7e-75 286.6 350 45.4
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 6.0e-75 285.4 349 49.0
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 6.0e-75 285.4 359 45.7
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.0e-74 284.6 392 42.1
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.0e-74 284.6 392 42.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.3e-74 284.3 353 43.9
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.0e-74 283.1 395 41.5
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 6.6e-74 282.0 366 44.5
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.5e-73 280.8 364 44.8
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.9e-73 280.4 277 55.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.5e-73 280.0 360 47.5
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.2e-72 277.7 355 43.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.8e-72 276.6 351 47.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.6e-72 276.2 311 51.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.6e-72 276.2 354 44.9
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 6.2e-72 275.4 351 44.2
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 6.2e-72 275.4 274 52.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.4e-71 274.2 355 45.4
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.4e-71 274.2 274 52.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.8e-71 273.9 359 44.3
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.8e-71 273.9 351 47.0
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 3.1e-71 273.1 359 44.6
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 5.2e-71 272.3 366 45.1
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.8e-71 271.9 348 44.5
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.2e-70 271.2 360 44.4
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.5e-70 270.8 310 46.5
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.5e-70 270.8 353 44.5
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.4e-70 269.2 321 47.7
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 4.4e-70 269.2 366 44.5
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.8e-70 268.9 313 51.8
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 7.5e-70 268.5 354 44.6
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-69 267.7 362 43.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.3e-69 267.7 361 45.4
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.3e-69 267.7 350 44.6
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 2.9e-69 266.5 354 44.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.9e-68 263.8 284 51.4
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.4e-68 263.5 361 44.6
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.4e-68 263.5 365 43.6
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 3.2e-68 263.1 349 42.7
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.1e-68 262.7 352 43.5
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 5.1e-66 255.8 257 51.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.9e-65 253.8 265 49.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 9.5e-65 251.5 298 46.3
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.1e-64 250.4 234 55.6
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.4e-63 246.9 365 40.8
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.1e-63 246.5 235 55.7
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.2e-63 245.7 352 44.0
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 6.8e-63 245.4 358 42.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 2.2e-61 240.4 299 47.8
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 5.4e-60 235.7 248 52.0
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 4.6e-59 232.6 432 34.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.4e-55 220.3 317 43.8
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.6e-54 216.9 313 42.8
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 4.4e-54 216.1 302 41.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.2e-52 209.5 244 48.4
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.1e-51 207.2 256 45.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.1e-51 207.2 358 38.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.5e-51 206.5 318 40.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.9e-50 203.0 263 43.7
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.8e-46 189.1 317 39.1
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.9e-42 176.4 215 46.5
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.1e-39 168.3 215 45.6
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 4.0e-39 166.4 449 28.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.4e-37 159.1 183 45.9
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.4e-36 157.1 205 44.4
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-34 151.4 201 46.3
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 6.7e-34 149.1 118 58.5
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.5e-33 147.1 154 55.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 4.3e-33 146.4 254 36.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-30 138.3 217 38.2
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.7e-29 134.4 147 51.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.6e-27 127.9 159 45.3
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.3e-26 124.8 292 28.4
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.9e-26 123.2 166 43.4
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.9e-20 104.4 129 46.5
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.2e-19 101.7 111 49.5
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.7e-19 100.5 105 44.8
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.6e-19 100.1 77 62.3
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.6e-19 100.1 199 35.7
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 6.1e-19 99.4 333 25.5
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.5e-17 94.7 101 50.5
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.8e-16 90.5 93 46.2
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.8e-16 89.7 93 45.2
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 5.3e-15 86.3 113 39.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 5.9e-14 82.8 110 39.1
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 7.7e-14 82.4 160 30.0
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.7e-13 81.3 76 51.3
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.4e-12 75.5 125 38.4
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-11 74.7 147 33.3
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.8e-10 71.2 78 50.0
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 9.1e-07 58.9 55 50.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 3.5e-06 57.0 56 48.2


User provided reference genes

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