Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 6.4e-61 237.7 160 100.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.1e-56 222.6 161 96.9
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.1e-27 126.3 132 68.2
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 3.9e-26 122.1 121 70.2
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 3.9e-26 122.1 143 63.6
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 6.7e-26 121.3 97 82.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.1e-25 120.6 125 72.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.5e-25 120.2 136 64.7
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.5e-25 119.4 172 57.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.3e-25 119.0 98 82.7
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.3e-25 118.6 158 58.9
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 4.3e-25 118.6 97 84.5
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 3.7e-24 115.5 96 80.2
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.8e-24 115.2 97 83.5
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 6.2e-24 114.8 97 84.5
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.4e-23 113.6 97 77.3
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.8e-23 113.2 94 81.9
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.4e-23 112.8 91 86.8
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 4.0e-23 112.1 141 64.5
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 6.9e-23 111.3 162 54.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 6.9e-23 111.3 96 81.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.9e-23 111.3 97 82.5
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 6.9e-23 111.3 97 83.5
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 6.9e-23 111.3 97 82.5
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 9.0e-23 110.9 171 56.7
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 9.0e-23 110.9 169 57.4
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.5e-22 110.2 158 57.6
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.0e-22 109.8 94 81.9
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 2.0e-22 109.8 94 86.2
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.6e-22 109.4 95 84.2
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 3.4e-22 109.0 126 65.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.5e-22 108.6 141 63.8
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 4.5e-22 108.6 97 77.3
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 5.8e-22 108.2 97 77.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.8e-22 108.2 96 82.3
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.8e-22 108.2 96 82.3
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.8e-22 108.2 96 82.3
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 5.8e-22 108.2 96 83.3
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 7.6e-22 107.8 96 80.2
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 7.6e-22 107.8 157 58.0
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 9.9e-22 107.5 97 82.5
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.7e-21 106.7 153 56.2
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.7e-21 106.7 98 67.3
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.2e-21 106.3 97 81.4
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.2e-21 106.3 97 79.4
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.9e-21 105.9 99 79.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.9e-21 105.9 97 82.5
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 3.8e-21 105.5 136 63.2
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.9e-21 105.1 97 80.4
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 6.4e-21 104.8 92 82.6
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 6.4e-21 104.8 97 81.4
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.4e-20 103.6 91 81.3
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.9e-20 103.2 97 78.4
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.5e-20 102.8 98 77.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.2e-20 102.4 96 77.1
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.2e-20 102.4 84 89.3
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.1e-20 101.3 97 77.3
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 9.3e-20 100.9 97 74.2
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.2e-19 100.5 140 60.7
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.6e-19 100.1 92 80.4
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 2.7e-19 99.4 164 54.9
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.7e-19 99.4 97 71.1
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.7e-19 99.4 136 54.4
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.6e-19 98.6 88 80.7
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 6.0e-19 98.2 97 78.4
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.0e-18 97.4 173 52.6
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.0e-18 95.9 97 70.1
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 3.0e-18 95.9 130 61.5
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.0e-18 95.9 153 51.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 6.7e-18 94.7 102 76.5
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 8.7e-18 94.4 97 76.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 8.7e-18 94.4 88 72.7
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.1e-17 94.0 97 74.2
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.1e-17 94.0 97 74.2
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.1e-17 94.0 97 74.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.1e-17 94.0 160 51.9
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.5e-17 93.6 122 63.9
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.5e-17 93.6 99 66.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.5e-17 92.8 93 68.8
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 3.3e-17 92.4 96 74.0
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 4.3e-17 92.0 155 52.9
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.4e-17 91.3 99 73.7
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.6e-17 90.9 166 46.4
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.6e-17 90.9 158 48.7
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.3e-16 90.5 166 46.4
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.6e-16 90.1 166 46.4
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.6e-16 90.1 99 76.8
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.8e-16 89.4 100 67.0
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.8e-16 89.4 97 74.2
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.7e-16 89.0 99 72.7
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.7e-16 89.0 99 72.7
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.8e-16 88.6 99 72.7
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.8e-16 88.6 166 45.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 6.2e-16 88.2 98 73.5
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 6.2e-16 88.2 52 84.6
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.8e-15 86.7 121 62.0
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.8e-15 86.7 99 71.7
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.8e-15 86.7 124 54.0
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 3.1e-15 85.9 155 54.2
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 3.1e-15 85.9 102 66.7
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 4.0e-15 85.5 97 75.3
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.0e-15 85.5 102 73.5
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.9e-15 84.7 166 45.8
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.3e-13 80.5 83 66.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.7e-13 80.1 115 59.1
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.5e-13 78.2 84 65.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 8.4e-13 77.8 84 65.5
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 8.4e-13 77.8 84 65.5
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 8.4e-13 77.8 84 65.5
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 8.4e-13 77.8 84 65.5
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 1.1e-12 77.4 86 73.3
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-12 77.0 84 63.1
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.2e-12 75.9 85 69.4
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.2e-12 75.5 96 56.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 7.1e-12 74.7 133 48.1
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 7.1e-12 74.7 84 61.9
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 7.1e-12 74.7 84 61.9
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 7.1e-12 74.7 133 47.4
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 7.1e-12 74.7 84 61.9
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.3e-12 74.3 84 70.2
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.6e-11 73.6 85 64.7
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.6e-11 73.6 142 48.6
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.7e-11 72.8 88 60.2
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.5e-11 72.4 84 67.9
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 7.9e-11 71.2 84 67.9
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 7.9e-11 71.2 97 60.8
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.8e-10 70.1 181 45.3
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.5e-09 67.0 84 67.9
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.5e-09 66.2 67 68.7
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.3e-09 65.9 97 56.7
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.7e-09 65.1 145 45.5
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 5.7e-09 65.1 98 54.1
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 7.4e-09 64.7 67 68.7
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.3e-08 63.9 79 62.0
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.6e-08 63.5 84 63.1
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.6e-08 63.5 88 47.7
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-08 63.5 67 65.7
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.2e-08 63.2 133 42.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.8e-08 62.8 93 53.8
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 3.7e-08 62.4 91 63.7
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-07 60.5 159 40.3
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.4e-07 60.5 90 56.7
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 3.1e-07 59.3 91 61.5
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.4e-06 55.8 67 53.7
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.9e-06 55.1 67 59.7


User provided reference genes

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