Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 5.8e-172 607.4 302 100.0
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 6.5e-115 417.9 302 74.2
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.6e-57 227.3 244 49.6
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.1e-56 223.0 295 44.4
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 4.0e-56 222.6 296 44.6
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.2e-55 221.1 294 44.9
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 3.0e-51 206.5 301 41.5
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 3.0e-51 206.5 301 41.5
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.6e-51 205.3 301 41.5
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.9e-50 203.8 246 44.3
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 7.3e-50 201.8 293 38.9
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 2.1e-49 200.3 303 39.3
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 3.1e-48 196.4 301 37.9
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 3.4e-47 193.0 299 38.8
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 5.8e-47 192.2 284 38.7
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 7.6e-47 191.8 246 46.3
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 7.6e-47 191.8 276 46.0
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 2.9e-46 189.9 297 38.7
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 3.8e-46 189.5 288 43.1
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 4.9e-46 189.1 301 39.5
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 4.9e-46 189.1 307 38.1
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 6.4e-46 188.7 288 41.0
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 3.2e-45 186.4 301 39.2
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 5.4e-45 185.7 293 39.2
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 1.6e-44 184.1 334 37.4
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 1.1e-42 177.9 300 38.7
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 4.3e-42 176.0 267 39.7
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 5.6e-42 175.6 306 38.2
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 7.3e-42 175.3 293 34.8
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 7.3e-42 175.3 302 37.7
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 1.6e-41 174.1 252 39.3
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 2.1e-41 173.7 317 38.2
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 4.8e-41 172.6 270 41.9
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 4.8e-41 172.6 290 36.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 6.2e-41 172.2 299 37.5
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 5.3e-40 169.1 255 40.4
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 3.4e-39 166.4 300 37.7
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 5.8e-39 165.6 255 38.4
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 4.9e-38 162.5 263 39.5
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 4.9e-38 162.5 290 34.8
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 8.4e-38 161.8 288 38.9
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 1.9e-37 160.6 297 36.4
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 2.4e-37 160.2 299 36.8
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 3.2e-37 159.8 253 37.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 7.1e-37 158.7 287 35.9
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 1.2e-36 157.9 282 34.8
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.2e-36 157.9 213 43.2
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.1e-36 157.1 300 35.7
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 2.7e-36 156.8 258 36.4
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 3.5e-36 156.4 263 38.4
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 2.3e-35 153.7 240 37.9
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 5.1e-35 152.5 286 36.0
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 4.3e-34 149.4 296 34.5
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 4.3e-34 149.4 303 35.0
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 5.6e-34 149.1 202 39.1
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.3e-33 147.9 252 36.9
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 6.2e-33 145.6 281 34.9
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 4.0e-32 142.9 293 31.7
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 5.3e-32 142.5 276 35.1
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.5e-31 141.0 284 34.9
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 2.6e-31 140.2 247 38.1
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 3.4e-31 139.8 284 35.9
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 9.9e-31 138.3 281 34.9
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 9.9e-31 138.3 281 34.9
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.7e-30 137.5 284 34.2
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.9e-30 136.7 284 33.5
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 3.8e-30 136.3 285 34.7
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 4.9e-30 136.0 294 31.3
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 6.4e-30 135.6 213 38.5
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 8.4e-30 135.2 193 42.5
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.4e-29 133.7 317 34.7
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 4.2e-29 132.9 185 42.2
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 5.5e-29 132.5 317 33.8
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.3e-27 127.9 268 35.1
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.8e-27 127.5 270 34.4
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.5e-26 124.4 200 40.0
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 1.9e-26 124.0 289 32.2
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 9.6e-26 121.7 257 33.5
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 3.7e-25 119.8 216 35.2
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 6.2e-25 119.0 135 46.7
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.1e-24 118.2 288 30.2
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.0e-22 111.7 263 30.8
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.3e-22 111.3 270 30.4
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 3.2e-21 106.7 291 29.9
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 3.5e-20 103.2 214 30.4
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 7.9e-20 102.1 182 42.3
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.5e-18 97.8 202 34.2
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-18 97.8 137 43.1
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 8.4e-14 82.0 149 33.6
Ca_11065_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 5.7e-10 69.3 201 29.4
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 4.1e-08 63.2 76 43.4
Atru.chr3.2817 Acer truncatum HOM05D001524 ORTHO05D001392 2.6e-07 60.5 131 33.6
Ah.01g011010 Amaranthus hybridus HOM05D001524 ORTHO05D001392 3.4e-07 60.1 128 35.9
Atru.chr3.2819 Acer truncatum HOM05D001524 ORTHO05D001392 7.7e-07 58.9 180 29.4
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.3e-06 58.2 284 24.3
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 8.5e-06 55.5 133 28.6


User provided reference genes

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