Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.1e-161 572.4 313 100.0
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.1e-148 529.3 313 93.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.2e-135 486.9 313 87.2
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.4e-125 453.4 307 79.5
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.7e-122 441.4 307 76.5
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.2e-121 439.5 310 76.1
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 4.8e-121 438.3 311 75.6
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.8e-120 436.4 314 76.1
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.6e-119 432.6 299 77.3
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 7.7e-119 431.0 308 74.4
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.0e-118 430.6 306 74.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 5.0e-118 428.3 305 74.8
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.1e-117 427.2 311 73.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 3.2e-117 425.6 305 74.4
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.6e-116 423.3 308 73.4
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.7e-116 422.5 306 73.9
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.7e-116 422.5 308 72.4
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.6e-116 422.2 308 72.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 4.7e-116 421.8 305 74.1
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.7e-116 421.8 311 72.3
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 6.1e-116 421.4 308 73.4
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.4e-115 420.2 311 73.0
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-115 419.9 311 72.3
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.8e-115 419.9 307 72.3
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.3e-115 419.5 308 76.3
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 5.2e-115 418.3 307 72.6
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 6.7e-115 417.9 306 73.5
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 6.7e-115 417.9 306 73.5
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.8e-115 417.5 309 72.5
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.5e-114 416.8 311 72.0
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 2.6e-114 416.0 307 72.6
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.6e-114 416.0 311 72.0
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 4.4e-114 415.2 309 76.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 4.4e-114 415.2 308 72.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.2e-113 412.9 308 70.8
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.7e-113 412.1 309 71.8
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.7e-113 412.1 311 71.7
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 8.2e-113 411.0 306 71.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 8.2e-113 411.0 307 70.4
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.4e-112 410.2 307 71.3
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 7.0e-112 407.9 308 69.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 7.0e-112 407.9 307 69.1
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 3.5e-111 405.6 308 72.1
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 7.7e-111 404.4 304 72.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.0e-110 404.1 305 71.8
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 2.2e-110 402.9 308 69.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 5.0e-110 401.7 310 71.0
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 5.0e-110 401.7 307 71.0
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.9e-109 399.8 304 70.7
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.5e-109 399.4 310 69.7
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 3.2e-109 399.1 291 73.2
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 5.5e-109 398.3 299 73.2
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 7.2e-109 397.9 319 68.0
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 9.4e-109 397.5 308 72.4
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.1e-108 396.4 304 73.7
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 8.0e-108 394.4 308 68.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.3e-107 392.9 300 70.7
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.0e-107 392.5 302 73.5
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.0e-107 392.1 300 72.0
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 5.2e-107 391.7 307 71.7
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 8.8e-107 391.0 310 71.0
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 4.4e-106 388.7 306 69.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.3e-105 387.1 299 73.2
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.1e-104 382.5 319 69.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 4.1e-104 382.1 306 67.3
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.2e-103 380.6 307 69.1
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.2e-103 380.6 307 69.7
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 4.5e-103 378.6 308 67.9
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.3e-102 377.1 308 66.9
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.7e-102 376.7 300 68.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 6.5e-102 374.8 307 67.1
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.1e-101 374.0 300 69.0
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.5e-101 373.6 307 67.8
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.5e-101 373.6 304 67.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.9e-101 373.2 307 67.8
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 3.2e-101 372.5 300 66.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 4.2e-101 372.1 307 69.4
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 4.2e-101 372.1 305 64.6
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.2e-101 372.1 307 67.1
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 4.2e-101 372.1 296 68.6
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.5e-101 371.7 307 69.4
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 9.4e-101 370.9 303 67.3
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 9.4e-101 370.9 310 65.5
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.2e-100 370.5 303 67.3
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.6e-100 370.2 304 66.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-100 369.0 302 65.6
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 3.6e-100 369.0 302 65.2
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 4.7e-100 368.6 307 65.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 8.0e-100 367.9 312 66.7
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 8.0e-100 367.9 314 66.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.0e-99 367.5 307 69.1
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.8e-99 366.7 314 66.2
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 2.3e-99 366.3 305 66.6
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 6.8e-99 364.8 300 66.7
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-98 364.0 302 65.2
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.6e-98 362.8 303 65.0
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.6e-98 362.8 303 65.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.4e-98 362.5 298 67.4
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.4e-98 362.5 295 67.5
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 4.4e-98 362.1 303 65.3
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.3e-97 360.5 305 63.9
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.7e-97 360.1 291 68.0
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.2e-97 359.8 302 65.9
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 4.8e-97 358.6 300 64.7
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 2.4e-96 356.3 300 65.7
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.1e-96 355.5 300 66.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 9.1e-96 354.4 308 68.2
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.2e-95 354.0 291 67.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-95 353.6 303 64.7
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 5.9e-95 351.7 291 67.4
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 2.9e-94 349.4 291 66.7
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 2.9e-94 349.4 304 63.5
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 5.5e-93 345.1 293 66.2
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.2e-92 344.0 307 62.9
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 4.1e-88 328.9 242 72.7
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.5e-87 325.9 317 60.3
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.7e-86 323.6 242 71.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.6e-84 315.8 304 60.2
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.4e-72 277.3 230 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.0e-70 269.6 302 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.6e-70 268.5 303 55.4
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.1e-61 241.1 297 52.5
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.6e-58 228.4 209 60.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.2e-57 226.9 201 64.7
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.9e-56 223.8 239 54.4
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.7e-55 219.9 297 50.5
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 5.3e-51 205.7 259 55.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 3.4e-50 203.0 298 41.9
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 5.8e-50 202.2 255 52.2
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.7e-49 200.7 325 43.1
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 6.0e-47 192.2 127 76.4
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-46 190.7 128 77.3
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.1e-43 181.4 320 40.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.3e-43 179.1 311 41.8
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 3.4e-42 176.4 294 38.1
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.0e-33 148.3 308 36.0
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 8.4e-33 145.2 94 79.8
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.6e-31 141.0 118 64.4
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 6.0e-31 139.0 208 41.3
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.4e-27 127.9 90 72.2
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.3e-25 121.3 77 77.9
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.7e-25 120.9 213 39.9
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 3.8e-25 119.8 129 51.2
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.5e-21 107.8 64 81.2
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-17 94.4 168 41.7
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.7e-17 94.4 168 41.7
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.7e-17 94.4 168 41.7
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 5.0e-17 92.8 160 38.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-15 88.2 91 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.0e-14 85.1 84 56.0
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 3.0e-14 83.6 84 56.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 6.7e-14 82.4 71 64.8
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 5.7e-13 79.3 67 62.7
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.5e-10 71.2 89 46.1
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 7.2e-08 62.4 111 38.7
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-07 61.6 40 75.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.9e-06 56.6 97 38.1


User provided reference genes

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