Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 3.7e-168 594.7 291 100.0
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 8.1e-163 577.0 291 97.6
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 1.0e-125 453.8 229 96.1
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 3.3e-116 422.2 279 75.6
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 4.3e-108 395.2 261 76.2
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 3.1e-106 389.0 280 69.6
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 7.7e-105 384.4 288 70.1
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.4e-103 380.2 255 74.1
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 7.2e-103 377.9 258 73.3
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 1.6e-102 376.7 266 72.6
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 6.7e-101 371.3 255 72.5
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 5.7e-100 368.2 263 69.6
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.2e-99 366.3 260 70.8
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 2.8e-99 365.9 261 68.6
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 3.7e-99 365.5 264 69.7
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 3.7e-99 365.5 260 70.4
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 4.8e-99 365.2 260 71.2
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 6.3e-99 364.8 264 69.3
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 8.2e-99 364.4 258 71.7
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 1.1e-98 364.0 283 66.1
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.1e-98 364.0 263 69.6
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.4e-98 363.6 259 71.4
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 1.8e-98 363.2 257 69.6
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.8e-98 363.2 256 68.8
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 3.1e-98 362.5 264 69.3
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 4.1e-98 362.1 260 71.5
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 5.3e-98 361.7 261 68.6
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 9.1e-98 360.9 262 68.7
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 2.6e-97 359.4 264 68.2
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 2.6e-97 359.4 264 69.3
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 3.5e-97 359.0 258 69.4
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 5.9e-97 358.2 264 69.3
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 7.7e-97 357.8 228 77.2
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.2e-96 356.3 264 69.3
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.2e-96 356.3 264 69.3
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 2.2e-96 356.3 257 67.7
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.8e-96 355.5 271 67.5
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 6.5e-96 354.8 260 67.7
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 2.5e-95 352.8 260 68.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 7.2e-95 351.3 263 66.5
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 7.2e-95 351.3 258 67.4
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 7.2e-95 351.3 258 67.8
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 2.1e-94 349.7 271 66.1
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 3.6e-94 349.0 263 65.8
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 4.7e-94 348.6 263 65.4
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 6.1e-94 348.2 264 68.2
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 8.0e-94 347.8 264 66.3
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 8.0e-94 347.8 271 65.3
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 8.0e-94 347.8 258 67.1
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-93 347.1 259 68.0
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-93 347.1 259 67.6
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 1.4e-93 347.1 265 64.9
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 1.4e-93 347.1 263 65.4
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 1.8e-93 346.7 265 66.4
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 3.9e-93 345.5 261 66.7
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 5.2e-93 345.1 260 67.7
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 5.2e-93 345.1 263 63.9
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 5.2e-93 345.1 224 75.4
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 6.7e-93 344.7 257 66.9
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.1e-92 344.0 248 70.6
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.1e-92 344.0 222 77.0
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 3.3e-92 342.4 261 66.7
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 5.7e-92 341.7 260 66.2
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 9.7e-92 340.9 264 67.0
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 9.7e-92 340.9 258 66.3
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 2.2e-91 339.7 221 74.7
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 2.8e-91 339.3 260 66.9
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 2.8e-91 339.3 267 64.0
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 1.1e-90 337.4 222 74.8
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.4e-90 337.0 221 74.2
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 1.8e-90 336.7 243 68.3
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 3.1e-90 335.9 254 65.0
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.6e-89 332.8 264 65.5
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 4.5e-89 332.0 222 73.4
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 4.5e-89 332.0 222 74.8
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 1.7e-88 330.1 222 73.0
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 2.2e-88 329.7 261 63.2
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 5.0e-88 328.6 263 63.9
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 6.5e-88 328.2 258 62.4
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 8.5e-88 327.8 222 73.0
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 1.5e-87 327.0 219 73.5
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 4.2e-87 325.5 259 61.8
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 5.5e-87 325.1 271 62.4
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 1.6e-86 323.6 240 67.1
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.6e-86 323.6 244 65.2
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 8.0e-86 321.2 274 60.9
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.0e-85 320.9 263 62.4
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 1.4e-85 320.5 219 71.2
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 2.3e-85 319.7 219 71.7
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 3.0e-85 319.3 219 72.1
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 3.0e-85 319.3 264 60.2
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 6.7e-85 318.2 239 64.9
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 4.4e-84 315.5 246 63.8
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 4.4e-84 315.5 246 63.8
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 5.7e-84 315.1 244 64.3
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.7e-83 313.5 219 69.9
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.8e-83 312.8 278 59.7
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 2.8e-83 312.8 219 69.9
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 4.8e-83 312.0 222 70.7
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 3.1e-82 309.3 254 61.0
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 4.1e-82 308.9 254 60.6
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.0e-81 306.6 223 67.3
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 2.7e-81 306.2 254 60.2
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 3.5e-81 305.8 223 66.8
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.0e-80 304.3 246 61.4
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.0e-80 304.3 244 61.9
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.2e-80 303.1 214 69.6
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 6.5e-80 301.6 256 58.6
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 1.2e-78 297.4 253 58.5
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 2.0e-76 290.0 255 57.6
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 1.7e-75 287.0 212 66.0
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.8e-75 286.2 254 59.4
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.7e-73 279.6 264 58.7
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 8.6e-72 274.6 263 53.2
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 8.6e-72 274.6 211 64.0
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 1.2e-70 270.8 216 60.6
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.8e-70 269.6 219 62.1
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 1.2e-68 264.2 182 71.4
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.4e-58 230.7 188 63.8
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 3.6e-54 216.1 171 64.3
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 5.8e-52 208.8 141 70.2
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 1.4e-45 187.6 217 44.7
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 2.2e-43 180.3 154 61.7
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 6.6e-40 168.7 147 61.9
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 3.2e-34 149.8 116 68.1
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 7.3e-31 138.7 203 38.9
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 6.2e-30 135.6 177 42.9
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 1.2e-25 121.3 100 64.0
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.3e-14 84.7 66 62.1
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 1.7e-11 74.3 44 75.0
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 3.7e-06 56.6 39 64.1


User provided reference genes

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