Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 0.0e+00 1231.9 671 100.0
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 0.0e+00 1162.9 672 92.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.8e-149 533.9 587 53.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 4.0e-141 506.1 701 45.1
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.3e-136 490.3 696 44.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 7.4e-127 458.8 604 45.5
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.4e-125 453.8 642 44.9
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.9e-125 452.2 690 43.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 2.0e-124 450.7 590 45.9
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.6e-124 450.3 701 43.4
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.6e-124 450.3 706 42.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.4e-124 449.9 591 46.4
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 4.5e-124 449.5 591 46.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 5.8e-124 449.1 611 44.8
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.2e-123 447.2 589 47.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 3.8e-123 446.4 592 45.3
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.8e-123 446.4 583 44.9
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.9e-123 446.0 594 45.5
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.5e-123 445.7 712 43.5
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.1e-122 442.2 592 45.8
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.5e-121 439.9 586 45.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 4.6e-121 439.5 536 48.5
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.1e-119 434.9 596 45.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.5e-119 434.5 586 44.7
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 9.7e-119 431.8 691 43.6
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-118 431.0 591 45.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.8e-118 430.3 639 42.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.2e-118 428.7 639 43.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.0e-116 424.1 698 41.5
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 7.7e-116 422.2 590 43.4
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.0e-115 421.8 711 41.4
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.3e-115 421.4 615 41.8
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.6e-113 414.5 608 43.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.6e-113 414.5 709 40.3
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.0e-112 410.2 587 44.5
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.3e-111 406.8 624 42.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.3e-111 406.4 594 41.4
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.4e-111 405.6 563 43.9
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.3e-110 404.8 585 44.3
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.1e-109 400.2 582 42.6
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 4.1e-109 399.8 560 43.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.9e-109 399.1 568 43.8
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 4.5e-108 396.4 701 39.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.7e-108 395.6 701 39.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.0e-107 395.2 618 41.3
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.2e-107 394.0 571 43.4
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-106 391.3 593 42.7
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.4e-106 391.3 607 40.9
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 7.2e-106 389.0 586 41.8
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.2e-106 389.0 604 42.1
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.2e-105 388.3 583 42.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.2e-105 388.3 589 42.6
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-105 387.9 721 38.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.6e-105 387.9 644 41.3
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.6e-105 386.7 589 42.6
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-104 384.8 620 41.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.0e-104 383.6 586 41.8
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 3.0e-104 383.6 584 41.8
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.1e-104 382.9 662 39.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.6e-103 380.6 595 41.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 4.4e-103 379.8 600 40.7
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 9.7e-103 378.6 586 40.1
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 8.2e-102 375.6 591 39.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.8e-101 374.4 596 41.4
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-101 374.0 588 42.3
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 3.1e-101 373.6 700 37.0
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 4.1e-101 373.2 571 42.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 7.0e-101 372.5 588 42.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 9.1e-101 372.1 585 42.1
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.0e-100 370.9 597 40.0
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.6e-100 370.5 587 41.7
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 4.5e-100 369.8 598 40.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.8e-99 366.7 580 40.3
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 3.2e-98 363.6 591 41.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 9.4e-98 362.1 600 38.7
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.2e-97 361.7 634 40.5
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.6e-97 361.3 598 40.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.0e-96 357.1 585 39.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.9e-96 356.7 580 40.3
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.5e-95 354.8 603 39.8
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 2.8e-94 350.5 578 41.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 7.7e-92 342.4 591 38.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.3e-91 341.7 607 38.1
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.2e-91 340.9 603 39.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.2e-90 337.0 591 38.4
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.6e-89 333.6 597 39.0
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.7e-89 333.2 563 40.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 3.0e-88 330.5 597 38.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 5.2e-88 329.7 639 37.9
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.8e-88 329.3 631 36.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-85 322.0 587 38.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 2.4e-85 320.9 573 38.2
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 7.7e-84 315.8 595 37.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.0e-83 313.2 616 36.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.2e-82 310.5 655 36.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 5.5e-82 309.7 651 36.9
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 9.4e-82 308.9 469 40.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.6e-81 308.1 536 38.2
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 4.7e-81 306.6 435 45.7
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 8.8e-80 302.4 465 41.9
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.7e-78 298.1 381 46.2
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.7e-78 297.0 475 40.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.4e-77 294.3 457 40.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.3e-75 288.5 664 34.5
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.3e-75 288.5 664 34.5
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.8e-75 287.0 604 33.6
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.6e-75 286.2 408 43.4
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.9e-74 284.6 658 34.7
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 9.5e-74 282.3 390 44.1
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-71 275.4 663 33.8
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.4e-71 273.5 584 34.8
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.9e-67 260.4 360 44.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.5e-66 258.5 373 44.0
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.6e-65 255.0 388 39.7
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-63 248.8 404 39.6
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.4e-63 247.3 489 37.2
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.3e-58 230.7 348 42.2
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.6e-58 229.9 388 37.6
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.6e-57 228.4 431 35.0
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 6.8e-56 223.0 578 32.2
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.8e-55 219.2 340 38.8
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 2.9e-54 217.6 544 34.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.9e-45 188.3 474 32.1
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 6.2e-41 173.3 223 46.2
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 4.0e-40 170.6 150 61.3
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.8e-39 166.8 241 43.6
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 5.8e-39 166.8 352 35.5
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.3e-37 159.5 218 39.0
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.3e-34 149.8 138 54.3
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.6e-33 148.7 226 41.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 4.0e-32 144.1 221 42.5
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.7e-30 138.7 140 57.9
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.4e-29 133.7 323 34.7
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-27 129.0 226 37.6
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.3e-27 128.3 123 55.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.6e-25 122.1 370 26.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-25 122.1 374 28.6
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.4e-24 118.2 204 33.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.4e-22 109.8 187 37.4
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.9e-21 108.6 108 54.6
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 5.4e-21 107.1 237 37.6
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-18 99.4 131 48.9
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 4.3e-18 97.4 126 42.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-17 95.9 79 60.8
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.1e-17 95.1 115 43.5
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 6.2e-17 93.6 104 51.9
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-15 89.0 83 57.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 4.5e-15 87.4 371 25.3
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.8e-14 84.3 69 60.9
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 2.1e-12 78.6 145 37.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.7e-12 78.2 112 41.1
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 7.9e-12 76.6 118 39.8
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 7.9e-12 76.6 156 35.3
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 3.9e-11 74.3 85 47.1
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-10 72.8 308 27.3
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.3e-10 70.9 49 69.4
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 5.7e-10 70.5 70 52.9
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.4e-10 70.1 140 35.7
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 2.1e-09 68.6 124 37.1
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.2e-09 66.6 98 42.9
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 5.3e-08 63.9 218 30.3
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-06 58.9 103 35.0
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 8.4e-06 56.6 68 48.5


User provided reference genes

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