Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 4.5e-183 644.4 316 100.0
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.8e-176 622.5 316 97.2
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 3.6e-148 528.5 316 80.7
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 3.3e-146 521.9 316 80.1
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 5.7e-146 521.2 316 80.1
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.4e-144 515.8 316 78.2
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.0e-143 512.7 316 78.5
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 5.9e-143 511.1 316 78.8
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 7.7e-143 510.8 328 77.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.7e-142 509.6 304 80.6
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 3.8e-142 508.4 316 78.2
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 8.5e-142 507.3 316 79.4
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 3.2e-141 505.4 316 77.5
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 3.2e-141 505.4 315 78.4
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.2e-140 503.4 316 76.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 2.1e-140 502.7 316 77.8
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 8.0e-140 500.7 316 77.2
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 8.0e-140 500.7 316 77.2
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.0e-139 500.4 316 77.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.4e-139 500.0 316 75.9
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.3e-139 499.2 316 76.6
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 3.0e-139 498.8 316 76.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 3.0e-139 498.8 327 74.6
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 5.2e-139 498.0 318 76.7
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 6.8e-139 497.7 316 76.6
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 7.5e-138 494.2 295 80.7
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.3e-137 493.4 320 74.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.7e-137 493.0 318 75.5
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 2.2e-137 492.7 316 75.9
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.8e-137 492.3 318 75.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.7e-137 491.9 316 74.7
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.4e-136 490.0 309 75.4
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.4e-136 489.2 316 74.4
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 3.1e-136 488.8 316 75.0
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.2e-135 486.9 316 74.1
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.6e-135 486.5 283 83.7
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.6e-135 486.5 317 75.1
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.0e-135 486.1 316 75.6
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.0e-135 486.1 350 70.3
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 2.0e-135 486.1 318 74.8
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.0e-135 486.1 304 78.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-135 485.7 320 75.9
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 2.7e-135 485.7 309 76.4
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 5.9e-135 484.6 316 74.7
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 7.7e-135 484.2 320 75.6
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.0e-134 483.8 316 74.7
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.3e-134 483.4 326 73.6
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.2e-134 482.6 318 76.1
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.2e-134 482.6 317 74.1
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.9e-134 482.3 316 75.0
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 3.8e-134 481.9 317 74.4
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 3.8e-134 481.9 373 66.5
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 5.0e-134 481.5 284 81.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.1e-133 480.3 301 76.1
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.2e-133 478.8 318 75.2
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 3.2e-133 478.8 317 74.1
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 3.2e-133 478.8 320 73.4
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.5e-133 478.0 316 74.1
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 5.5e-133 478.0 303 76.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.2e-132 476.9 302 74.8
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 2.1e-132 476.1 304 76.0
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.1e-132 476.1 311 74.6
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.1e-132 476.1 320 73.1
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.1e-132 476.1 336 69.6
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.7e-132 475.7 303 75.6
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.0e-131 473.8 368 66.8
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 3.0e-131 472.2 320 72.5
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.5e-130 469.9 346 67.6
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.0e-130 469.5 311 74.0
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 5.7e-130 468.0 304 75.7
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 5.7e-130 468.0 315 70.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 9.8e-130 467.2 300 76.0
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 3.7e-129 465.3 319 73.4
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 3.7e-129 465.3 309 73.5
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.4e-128 463.4 316 73.1
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-127 459.5 286 78.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 3.5e-127 458.8 300 75.3
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.7e-126 456.4 318 74.2
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 2.3e-126 456.1 325 70.5
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 8.6e-126 454.1 301 73.1
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 8.6e-126 454.1 303 70.6
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.1e-125 453.8 283 77.7
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.0e-123 445.7 301 70.8
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 2.0e-122 443.0 307 69.4
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 2.6e-122 442.6 303 69.6
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.6e-122 442.6 306 70.9
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.4e-122 442.2 306 70.9
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.4e-122 441.8 280 77.5
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 1.7e-121 439.9 304 69.1
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 1.7e-121 439.9 304 69.1
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 3.7e-121 438.7 303 68.3
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 3.7e-121 438.7 346 65.0
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 6.3e-121 438.0 304 68.8
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.1e-120 437.2 304 69.1
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.1e-120 437.2 304 69.4
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 4.1e-120 435.3 303 69.6
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 4.1e-120 435.3 304 68.4
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.6e-119 433.3 304 69.1
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.7e-118 429.9 303 68.3
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.7e-118 429.9 284 72.9
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 5.6e-117 424.9 303 67.7
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 5.6e-117 424.9 251 82.1
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 6.1e-116 421.4 304 67.1
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.2e-114 417.2 308 68.2
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 7.0e-112 407.9 302 63.2
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 4.6e-111 405.2 251 77.3
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.6e-108 395.6 293 67.9
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 1.4e-107 393.7 251 74.5
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 8.9e-107 391.0 326 62.0
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-104 383.6 319 63.9
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-104 383.6 251 74.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.1e-100 367.9 264 68.9
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 3.2e-96 355.9 301 57.5
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 3.5e-95 352.4 317 59.3
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.3e-94 350.5 227 75.3
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-89 333.6 222 74.8
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 8.7e-86 321.2 236 69.9
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 4.0e-75 285.8 209 68.4
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 4.5e-74 282.3 332 46.7
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-70 271.2 192 70.3
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 6.7e-70 268.5 187 70.6
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 4.3e-61 239.2 312 44.9
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 2.4e-59 233.4 175 70.9
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.9e-57 226.5 165 68.5
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 7.9e-55 218.4 142 76.1
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 7.4e-53 211.8 320 41.9
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 8.5e-49 198.4 317 38.8
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-47 193.4 173 58.4
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-41 174.1 112 75.9
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-37 161.0 100 77.0
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.2e-36 157.1 114 64.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.4e-27 127.1 92 69.6
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.4e-27 127.1 175 44.0
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 3.2e-24 116.7 77 74.0
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-24 116.3 80 73.8
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 4.0e-22 109.8 67 76.1
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 7.5e-21 105.5 86 61.6
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.7e-15 87.0 53 79.2
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-15 86.3 56 71.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-12 77.4 45 73.3
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 6.1e-07 59.3 42 59.5


User provided reference genes

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