Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 1.0e-148 530.4 348 100.0
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 3.2e-126 455.7 385 85.2
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.8e-100 370.2 200 98.0
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 3.9e-55 219.5 373 61.1
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.0e-50 204.9 320 65.0
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.5e-43 181.0 296 44.9
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 3.9e-39 166.4 295 43.4
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.1e-36 156.8 309 42.4
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.5e-35 152.9 290 44.5
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 8.5e-34 148.7 282 42.9
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.1e-28 131.7 286 38.5
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.0e-27 127.5 285 38.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.5e-25 120.6 326 34.7
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 4.2e-25 119.8 311 37.6
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 4.2e-25 119.8 299 34.1
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 5.5e-25 119.4 280 35.4
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 2.1e-24 117.5 301 37.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.6e-24 116.7 293 36.9
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.0e-23 115.2 285 40.0
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.4e-23 114.8 274 36.9
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 9.7e-22 108.6 305 37.0
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 1.7e-21 107.8 298 35.6
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.2e-21 107.5 277 36.5
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 3.7e-21 106.7 283 36.0
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.7e-21 106.7 292 36.3
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 4.8e-21 106.3 308 35.7
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 4.8e-21 106.3 296 34.5
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 6.3e-21 105.9 287 35.5
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 8.2e-21 105.5 283 36.0
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 1.1e-20 105.1 302 37.4
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 1.4e-20 104.8 285 36.5
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.4e-20 104.8 303 32.0
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 4.1e-20 103.2 295 33.9
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 4.1e-20 103.2 304 36.2
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 7.0e-20 102.4 279 37.6
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 7.0e-20 102.4 279 37.6
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 9.1e-20 102.1 312 33.7
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 9.1e-20 102.1 280 37.5
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 9.1e-20 102.1 279 38.0
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.6e-19 101.3 304 34.2
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 3.5e-19 100.1 298 33.6
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 5.9e-19 99.4 295 35.3
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.3e-18 98.2 297 33.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.7e-18 97.8 288 35.1
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 1.7e-18 97.8 277 36.1
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.2e-18 97.4 271 35.8
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 2.9e-18 97.1 294 34.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.9e-18 97.1 304 33.2
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 3.8e-18 96.7 284 35.6
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 3.8e-18 96.7 266 35.7
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 5.0e-18 96.3 278 34.9
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 5.0e-18 96.3 287 34.8
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 6.5e-18 95.9 153 40.5
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 8.5e-18 95.5 290 33.4
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.1e-17 95.1 297 35.7
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 1.1e-17 95.1 282 35.5
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 1.5e-17 94.7 280 37.1
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.5e-17 94.7 280 37.1
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.5e-17 94.7 276 32.6
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 3.2e-17 93.6 129 47.3
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.2e-17 93.6 300 34.7
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 4.2e-17 93.2 292 34.2
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 7.2e-17 92.4 284 32.0
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 9.4e-17 92.0 306 33.3
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 9.4e-17 92.0 295 31.2
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.2e-16 91.7 274 33.9
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.2e-16 91.7 291 34.0
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-16 91.3 287 34.5
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.6e-16 91.3 304 33.6
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.6e-16 91.3 293 34.1
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 1.4e-15 88.2 407 43.2
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.4e-15 88.2 288 34.0
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 2.3e-15 87.4 273 34.1
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 2.3e-15 87.4 291 33.7
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.3e-15 87.4 291 33.0
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 3.0e-15 87.0 288 33.0
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 3.0e-15 87.0 286 34.3
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 5.2e-15 86.3 263 35.4
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.5e-14 84.7 272 36.8
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.5e-14 84.7 272 37.1
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.0e-14 84.3 280 36.1
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 2.0e-14 84.3 273 31.9
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 2.0e-14 84.3 163 36.2
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 3.3e-14 83.6 274 33.6
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 3.3e-14 83.6 293 32.8
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 3.3e-14 83.6 284 30.3
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 4.4e-14 83.2 297 36.4
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 5.7e-14 82.8 319 30.4
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 5.7e-14 82.8 146 38.4
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 7.5e-14 82.4 303 33.0
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 7.5e-14 82.4 173 34.1
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 7.5e-14 82.4 146 35.6
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 9.7e-14 82.0 146 35.6
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.3e-13 81.6 270 31.9
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.3e-13 81.6 280 30.7
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 2.2e-13 80.9 285 33.7
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 2.8e-13 80.5 281 31.7
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 2.8e-13 80.5 252 34.9
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 3.7e-13 80.1 167 37.7
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 4.8e-13 79.7 285 30.5
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.8e-12 77.8 155 36.1
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 2.4e-12 77.4 281 31.7
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 3.1e-12 77.0 291 31.3
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.1e-12 76.6 166 33.1
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 5.3e-12 76.3 286 31.5
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 9.1e-12 75.5 160 35.6
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.2e-11 75.1 280 32.9
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.6e-11 74.7 155 38.1
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.6e-11 74.7 160 34.4
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 3.5e-11 73.6 159 35.8
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 4.5e-11 73.2 168 35.1
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 5.9e-11 72.8 283 33.9
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.0e-10 72.0 298 29.9
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-10 71.6 142 35.9
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.2e-10 70.9 171 31.6
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 3.8e-10 70.1 177 30.5
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 6.5e-10 69.3 212 32.1
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 6.5e-10 69.3 161 33.5
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 6.5e-10 69.3 274 31.4
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 1.5e-09 68.2 171 33.9
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 2.5e-09 67.4 293 30.0
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 2.5e-09 67.4 254 31.9
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 2.5e-09 67.4 240 31.7
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.2e-09 67.0 161 32.3
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 3.2e-09 67.0 257 30.4
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 4.2e-09 66.6 283 30.0
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 9.4e-09 65.5 228 33.8
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 9.4e-09 65.5 164 32.9
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 9.4e-09 65.5 162 30.9
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 3.6e-08 63.5 147 31.3
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 4.7e-08 63.2 160 28.8
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 4.7e-08 63.2 270 30.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.0e-07 62.0 178 33.1
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 1.8e-07 61.2 289 28.4
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.3e-07 60.8 171 32.7
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 3.0e-07 60.5 170 32.4
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 8.8e-07 58.9 163 28.2
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.2e-06 58.5 162 33.3
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.4e-06 56.6 37 64.9
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 7.5e-06 55.8 49 51.0
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 7.5e-06 55.8 41 61.0
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 7.5e-06 55.8 49 55.1
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 9.8e-06 55.5 45 55.6


User provided reference genes

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