Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 0.0e+00 1475.7 732 100.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 0.0e+00 1386.7 732 93.2
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 5.5e-277 957.6 749 64.4
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 4.8e-265 917.9 743 62.3
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.8e-259 899.4 705 62.8
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 4.4e-258 894.8 705 62.7
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.0e-251 872.1 705 60.9
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 5.2e-251 871.3 713 60.7
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 8.9e-251 870.5 696 61.9
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 8.9e-251 870.5 704 60.9
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.6e-250 869.0 739 60.1
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.6e-250 869.0 739 59.9
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 7.5e-250 867.5 738 59.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.9e-249 865.5 757 60.6
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 9.2e-248 860.5 739 60.1
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 6.6e-246 854.4 702 61.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.6e-244 849.7 751 57.7
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 5.2e-243 844.7 704 58.9
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.8e-243 844.3 747 56.4
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 8.9e-243 844.0 716 59.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 4.4e-242 841.6 745 58.4
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 7.5e-242 840.9 715 59.0
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.9e-241 839.0 741 57.4
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.9e-241 839.0 718 58.2
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 4.9e-241 838.2 702 59.3
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.4e-240 836.6 751 56.7
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 3.2e-240 835.5 702 59.0
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 5.4e-240 834.7 696 58.9
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.0e-240 834.3 723 58.5
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 4.6e-239 831.6 719 57.3
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 7.8e-239 830.9 724 59.3
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.0e-238 830.5 729 57.6
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.7e-238 829.7 708 58.6
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 6.6e-238 827.8 696 59.1
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.6e-238 827.4 723 58.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 3.3e-237 825.5 727 57.2
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 5.6e-237 824.7 723 57.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.6e-236 823.2 700 59.4
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.6e-236 823.2 719 57.4
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.6e-236 823.2 702 58.8
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.8e-236 822.4 736 57.7
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 3.6e-236 822.0 727 57.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 3.1e-235 818.9 725 56.6
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 6.4e-233 811.2 725 57.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 8.3e-233 810.8 702 58.3
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.4e-232 810.1 727 57.5
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 4.1e-232 808.5 708 57.3
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 7.1e-232 807.7 728 56.3
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 9.2e-232 807.4 700 58.1
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.7e-231 805.8 702 57.7
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.0e-230 803.9 778 53.0
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 5.1e-230 801.6 742 57.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.5e-229 800.0 705 57.9
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.6e-228 796.6 751 55.1
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.3e-225 786.9 725 55.3
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.9e-224 783.1 743 55.2
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 3.2e-224 782.3 622 62.2
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.6e-223 780.0 738 55.1
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.0e-223 778.1 709 55.6
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.9e-222 775.4 731 54.0
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.1e-221 773.9 729 54.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.9e-221 773.1 700 55.3
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.9e-221 773.1 733 54.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 9.6e-221 770.8 730 55.3
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.1e-219 767.3 702 54.7
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.1e-219 767.3 737 52.0
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 3.1e-219 765.8 723 53.5
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.1e-219 765.8 732 54.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 5.3e-219 765.0 733 53.6
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.5e-218 763.5 702 54.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.0e-218 763.1 708 53.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 7.6e-218 761.1 701 54.4
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.7e-217 760.0 692 55.1
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.2e-217 759.6 734 53.7
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.0e-214 750.7 701 54.8
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 6.2e-212 741.5 699 55.1
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 6.2e-212 741.5 616 60.2
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 4.0e-211 738.8 812 49.1
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.5e-210 735.3 701 53.6
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.7e-209 733.4 692 53.9
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 8.4e-209 731.1 649 58.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 9.3e-208 727.6 730 51.2
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.3e-206 723.0 678 54.9
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 2.8e-204 716.1 714 52.7
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 4.0e-203 712.2 733 52.0
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.5e-202 710.3 708 53.4
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.7e-196 689.1 658 53.8
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.4e-195 687.2 707 49.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.7e-193 680.2 729 50.2
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.7e-190 668.3 694 51.9
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 3.1e-187 659.4 635 52.9
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.7e-183 646.4 550 58.9
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 5.3e-179 632.1 487 64.1
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 8.5e-177 624.8 682 49.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 7.7e-170 601.7 733 44.9
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.8e-166 590.5 600 51.7
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.6e-162 577.4 731 44.9
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 5.9e-162 575.5 650 50.2
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.3e-137 493.8 537 49.7
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 2.0e-133 480.7 371 66.0
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.2e-127 459.1 711 37.4
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.9e-124 450.3 676 38.5
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.0e-118 429.9 694 36.2
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 3.4e-117 426.8 754 37.0
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 2.9e-116 423.7 788 36.4
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.4e-115 421.4 669 37.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.3e-113 414.1 420 51.9
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.9e-110 402.1 816 34.9
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.6e-109 399.1 333 57.7
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.9e-100 370.5 794 33.9
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 3.9e-97 360.1 370 48.9
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 2.2e-76 291.2 340 49.4
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.1e-74 284.6 288 52.8
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.7e-66 257.7 571 31.5
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.0e-54 216.5 329 38.6
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.2e-52 211.5 191 56.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 3.8e-52 210.7 133 72.9
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 5.5e-51 206.8 146 69.2
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 4.0e-49 200.7 180 58.9
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.5e-45 187.2 463 31.5
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.8e-38 165.2 167 47.3
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 2.8e-31 141.4 123 56.9
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 5.9e-29 133.7 89 62.9
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 3.8e-28 131.0 167 40.7
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.1e-18 98.6 75 56.0
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.5e-11 75.9 429 23.1
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.5e-11 75.9 81 45.7
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.2e-10 72.8 81 45.7
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-08 66.2 87 46.0
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 6.4e-07 60.5 97 40.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.1e-06 59.7 88 43.2
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.9e-06 58.9 129 33.3


User provided reference genes

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