Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 8.8e-119 430.3 211 100.0
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 5.4e-108 394.4 211 92.4
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.4e-103 379.8 211 90.5
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.4e-84 314.7 264 64.4
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.4e-84 314.7 264 64.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.7e-83 312.4 264 64.4
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.6e-83 311.6 264 64.4
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 6.0e-83 311.2 264 64.4
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 6.0e-83 311.2 264 64.4
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.3e-82 310.1 264 63.6
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.3e-82 310.1 264 63.6
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.3e-82 309.3 264 64.0
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.9e-82 308.5 264 64.4
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.9e-82 308.5 264 64.4
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.6e-81 303.9 265 64.2
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-80 303.5 264 62.5
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-80 303.5 264 62.5
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-80 303.5 264 62.5
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.6e-80 302.0 263 62.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.1e-79 300.4 264 62.9
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.2e-79 298.1 265 62.3
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 5.2e-79 298.1 262 61.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.2e-78 297.0 264 62.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.0e-78 296.2 264 62.1
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.0e-78 296.2 264 62.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.3e-77 293.5 264 61.4
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.7e-77 293.1 263 61.6
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-76 290.4 263 60.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-76 290.4 263 60.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-76 290.4 263 60.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-76 290.4 263 60.8
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.1e-76 290.4 256 62.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-76 289.3 263 60.5
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.4e-76 289.3 264 60.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 9.3e-76 287.3 263 60.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.6e-75 286.6 259 60.6
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.3e-74 283.5 262 61.1
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.7e-74 283.1 265 61.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 3.3e-73 278.9 249 61.4
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.6e-73 278.1 261 59.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 3.6e-72 275.4 261 60.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 3.6e-72 275.4 261 60.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 3.6e-72 275.4 261 60.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 3.6e-72 275.4 261 60.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 3.6e-72 275.4 261 60.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 3.6e-72 275.4 261 60.2
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-70 269.6 261 57.5
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 4.4e-70 268.5 250 60.0
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 5.8e-70 268.1 164 81.1
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 5.8e-70 268.1 164 81.1
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.6e-70 267.7 164 81.1
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 9.9e-70 267.3 195 69.7
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.2e-69 266.2 164 80.5
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.2e-69 266.2 185 73.0
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.9e-69 265.8 164 80.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-68 263.8 264 56.4
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 6.6e-66 254.6 164 76.8
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 8.7e-66 254.2 242 59.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 9.6e-65 250.8 238 60.5
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 2.1e-64 249.6 181 70.7
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.8e-63 246.5 174 69.5
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.4e-63 246.1 144 84.0
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-62 242.3 237 58.2
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.9e-60 236.5 176 68.8
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.4e-60 236.1 154 76.6
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.2e-60 235.3 250 54.4
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.7e-59 232.6 250 54.0
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.3e-56 223.8 208 59.1
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-56 223.8 263 51.3
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.7e-56 222.2 142 79.6
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.8e-56 221.9 142 79.6
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 6.9e-55 218.0 126 83.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 7.6e-54 214.5 256 50.8
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.6e-54 214.5 256 50.8
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 3.8e-53 212.2 208 56.2
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 4.9e-53 211.8 263 45.6
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.3e-50 203.0 181 59.7
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.3e-50 203.0 181 59.7
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.4e-45 184.5 195 51.8
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.1e-44 184.1 114 83.3
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 3.5e-43 179.1 128 68.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.6e-43 178.7 116 79.3
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.3e-42 176.4 165 61.8
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.3e-40 170.6 265 44.5
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 2.4e-39 166.4 112 75.9
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.3e-37 160.6 114 78.1
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.1e-36 157.5 196 45.9
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.5e-36 156.4 103 80.6
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.6e-35 152.1 114 73.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-33 147.5 175 48.6
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 4.3e-33 145.6 157 51.0
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.7e-33 144.4 238 40.3
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-29 133.7 179 45.8
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 8.5e-29 131.3 76 82.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 7.2e-28 128.3 150 48.0
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 2.7e-27 126.3 91 74.7
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 2.7e-27 126.3 98 55.1
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-26 124.0 207 43.0
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-24 117.5 117 59.8
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 8.2e-24 114.8 144 46.5
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.3e-23 112.1 114 52.6
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 4.2e-20 102.4 66 81.8
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-16 90.9 148 41.9
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 3.7e-16 89.4 127 44.9
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.1e-15 85.9 105 48.6
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 5.3e-15 85.5 51 70.6
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.5e-14 82.8 105 47.6
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.5e-14 82.8 63 63.5
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 2.5e-12 76.6 83 51.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.2e-11 74.3 129 38.8
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.2e-09 67.8 41 73.2
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-07 61.2 48 66.7
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 3.1e-07 59.7 48 64.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.1e-07 59.7 48 64.6
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 3.1e-07 59.7 48 64.6
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.0e-07 58.5 48 64.6
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.0e-07 58.5 39 66.7
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 9.1e-07 58.2 48 62.5
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.5e-06 56.2 35 74.3


User provided reference genes

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