Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.2e-44 183.0 107 100.0
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.4e-43 178.7 107 86.0
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.6e-20 102.8 78 64.1
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 8.1e-20 100.5 78 62.8
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 8.1e-20 100.5 102 50.0
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.8e-19 99.4 79 58.2
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 3.1e-19 98.6 80 58.8
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 3.1e-19 98.6 78 56.4
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 9.0e-19 97.1 80 57.5
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 9.0e-19 97.1 78 61.5
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.2e-18 96.7 75 62.7
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.5e-18 96.3 75 61.3
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 4.5e-18 94.7 78 60.3
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 4.5e-18 94.7 74 63.5
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 5.8e-18 94.4 75 60.0
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 5.8e-18 94.4 80 57.5
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 3.8e-17 91.7 80 56.2
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 4.9e-17 91.3 73 63.0
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 4.9e-17 91.3 77 58.4
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 6.4e-17 90.9 75 58.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 8.4e-17 90.5 80 55.0
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.1e-16 90.1 80 52.5
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.4e-16 89.7 74 58.1
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.4e-16 89.7 79 57.0
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.4e-16 89.7 80 52.5
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.9e-16 89.4 107 47.7
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.9e-16 89.4 80 52.5
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.9e-16 89.4 80 52.5
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.9e-16 89.4 80 53.8
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 2.4e-16 89.0 74 58.1
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 3.2e-16 88.6 74 58.1
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.2e-16 88.2 80 53.8
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 5.5e-16 87.8 74 59.5
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 5.5e-16 87.8 80 51.2
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 5.5e-16 87.8 80 52.5
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 9.3e-16 87.0 80 55.0
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.2e-15 86.7 74 58.1
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.6e-15 86.3 81 51.9
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 7.9e-15 84.0 79 53.2
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.0e-14 83.6 75 53.3
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.3e-14 83.2 102 44.1
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.3e-14 83.2 73 54.8
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 2.3e-14 82.4 75 57.3
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 2.3e-14 82.4 74 55.4
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 2.3e-14 82.4 75 53.3
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 3.0e-14 82.0 73 56.2
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 3.9e-14 81.6 79 54.4
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.9e-14 81.6 75 53.3
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 5.1e-14 81.3 76 53.9
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 6.7e-14 80.9 79 53.2
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 6.7e-14 80.9 76 53.9
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 6.7e-14 80.9 72 56.9
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 8.7e-14 80.5 79 51.9
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 8.7e-14 80.5 74 54.1
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.1e-13 80.1 74 54.1
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.1e-13 80.1 75 53.3
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 1.5e-13 79.7 79 48.1
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.5e-13 79.7 67 55.2
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 1.5e-13 79.7 80 47.5
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.9e-13 79.3 80 48.8
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 2.5e-13 79.0 79 49.4
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 3.3e-13 78.6 102 48.0
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 3.3e-13 78.6 74 55.4
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 5.6e-13 77.8 78 52.6
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 5.6e-13 77.8 95 44.2
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 7.4e-13 77.4 105 38.1
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 9.6e-13 77.0 105 38.1
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 9.6e-13 77.0 74 50.0
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 1.3e-12 76.6 79 46.8
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.3e-12 76.6 79 46.8
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 3.7e-12 75.1 74 47.3
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.8e-12 74.7 74 52.7
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.8e-12 74.7 74 52.7
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 6.2e-12 74.3 74 51.4
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 8.2e-12 73.9 74 54.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 8.2e-12 73.9 81 48.1
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.4e-11 73.2 74 52.7
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-11 73.2 74 52.7
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-11 73.2 74 52.7
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.4e-11 73.2 74 50.0
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.8e-11 72.8 70 57.1
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.8e-11 72.8 70 57.1
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.4e-11 72.4 74 51.4
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.4e-11 72.4 74 51.4
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 2.4e-11 72.4 64 59.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 3.1e-11 72.0 74 50.0
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 5.3e-11 71.2 71 46.5
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 2.0e-10 69.3 54 57.4
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 2.0e-10 69.3 55 56.4
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 4.5e-10 68.2 71 52.1
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.7e-09 66.2 76 44.7
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 2.2e-09 65.9 56 55.4
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 2.2e-09 65.9 56 55.4
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 2.9e-09 65.5 79 45.6
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 6.5e-09 64.3 105 35.2
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 6.5e-09 64.3 56 55.4
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 6.5e-09 64.3 56 53.6
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 8.4e-09 63.9 56 55.4
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.2e-08 62.0 54 51.9
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 3.2e-08 62.0 54 53.7
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 5.5e-08 61.2 55 52.7
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 7.1e-08 60.8 55 58.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 7.1e-08 60.8 55 52.7
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 2.1e-07 59.3 50 56.0
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 3.5e-07 58.5 55 49.1
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 4.6e-07 58.2 56 53.6
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.6e-07 58.2 55 50.9
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 6.0e-07 57.8 83 41.0
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.0e-06 57.0 56 46.4
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.0e-06 57.0 56 46.4
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 3.0e-06 55.5 57 43.9
Pp3c5_22300 Physcomitrium patens HOM05D006948 ORTHO05D008703 3.0e-06 55.5 72 40.3
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 3.0e-06 55.5 57 45.6
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 3.9e-06 55.1 48 50.0


User provided reference genes

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