Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 8.5e-188 660.2 340 100.0
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 6.5e-164 580.9 342 90.1
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 4.6e-133 478.4 320 73.4
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 7.1e-126 454.5 337 68.5
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 5.6e-123 444.9 310 72.3
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.3e-121 439.5 341 66.6
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.4e-120 435.6 294 72.4
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 4.9e-119 431.8 295 71.9
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.4e-118 429.5 297 72.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 4.1e-118 428.7 292 72.3
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 5.4e-118 428.3 293 71.3
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 9.2e-118 427.6 293 70.6
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.6e-117 426.8 332 64.5
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.7e-117 426.0 323 66.3
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.7e-117 426.0 330 66.4
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 7.8e-117 424.5 293 70.6
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 7.8e-117 424.5 293 70.6
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.0e-116 424.1 336 64.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.3e-116 423.7 341 64.8
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.7e-116 423.3 302 68.2
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-116 422.9 331 64.0
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-116 422.9 340 64.4
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.3e-116 422.9 320 65.9
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 3.0e-116 422.5 336 63.7
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 3.0e-116 422.5 336 63.7
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 3.9e-116 422.2 294 69.4
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 3.9e-116 422.2 293 70.3
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 5.1e-116 421.8 336 64.6
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 8.6e-116 421.0 341 64.5
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 8.6e-116 421.0 298 68.8
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.5e-115 420.2 303 67.7
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.5e-115 419.5 295 68.1
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.5e-115 419.5 328 64.0
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.3e-115 419.1 292 70.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 3.3e-115 419.1 329 65.0
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 3.3e-115 419.1 298 67.4
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 5.6e-115 418.3 298 68.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 2.1e-114 416.4 329 63.5
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.1e-114 416.4 346 62.1
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.1e-114 416.4 298 68.1
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 2.8e-114 416.0 293 68.6
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 8.1e-114 414.5 328 63.7
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 8.1e-114 414.5 294 68.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.1e-113 414.1 341 63.6
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.1e-113 414.1 320 64.1
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.1e-113 414.1 341 62.8
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.1e-113 414.1 298 67.8
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.8e-113 413.3 300 67.3
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.4e-113 412.9 341 62.5
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.4e-113 412.9 341 62.8
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 4.0e-113 412.1 298 67.1
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 4.0e-113 412.1 298 67.1
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 4.0e-113 412.1 344 61.9
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.9e-113 411.0 303 66.7
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.2e-112 410.6 336 63.4
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.0e-112 409.8 324 64.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.6e-112 409.5 298 67.1
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.4e-112 409.1 340 62.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 3.4e-112 409.1 342 63.2
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 4.4e-112 408.7 314 65.6
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.4e-112 408.7 332 61.4
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.4e-112 408.7 333 62.8
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.6e-112 407.9 292 68.5
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 7.6e-112 407.9 320 65.3
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 9.9e-112 407.5 334 61.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.3e-111 407.1 346 62.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-111 407.1 298 67.4
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.3e-111 407.1 334 62.6
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.7e-111 406.8 313 63.9
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.2e-111 406.4 306 65.7
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.9e-111 406.0 333 62.5
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.9e-111 406.0 336 60.4
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.9e-111 406.0 334 62.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.4e-110 403.7 332 61.1
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.4e-110 402.9 299 66.2
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.4e-110 402.9 343 61.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 3.2e-110 402.5 307 65.1
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 7.1e-110 401.4 334 62.3
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 7.1e-110 401.4 334 60.5
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.2e-109 400.6 300 64.3
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 1.2e-109 400.6 339 62.2
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.1e-109 399.8 340 61.5
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.6e-109 398.7 323 61.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 7.8e-109 397.9 295 67.1
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.3e-108 397.1 299 64.2
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.0e-108 396.0 300 66.0
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.1e-108 395.2 342 61.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.1e-107 394.0 305 63.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.5e-107 393.7 299 65.6
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-107 393.7 292 65.1
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.5e-107 393.7 292 65.1
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.5e-107 393.7 319 60.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.9e-107 393.3 332 59.6
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 3.3e-107 392.5 299 65.2
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.3e-107 392.1 292 64.4
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 6.9e-105 384.8 327 61.2
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 3.4e-104 382.5 330 59.4
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 3.8e-103 379.0 300 63.0
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.4e-102 376.3 288 65.6
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.4e-102 376.3 288 65.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.4e-102 375.2 334 59.9
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.3e-102 374.4 297 63.3
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.3e-102 374.4 288 64.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 6.0e-101 371.7 346 59.2
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.3e-100 369.8 396 51.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.6e-99 365.2 333 54.1
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 9.6e-99 364.4 269 65.4
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.3e-98 364.0 356 55.9
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.1e-97 360.9 315 58.4
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 6.4e-95 351.7 297 58.9
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 5.1e-92 342.0 290 57.2
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 6.7e-92 341.7 315 55.2
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.8e-90 336.3 298 59.4
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 3.8e-87 325.9 272 62.1
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 8.4e-87 324.7 339 51.9
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 4.3e-83 312.4 292 56.5
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.8e-80 302.0 289 52.6
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.9e-78 297.0 216 68.5
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.7e-77 293.1 302 54.6
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.3e-76 290.0 248 58.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.1e-73 281.2 290 46.9
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.2e-71 273.5 294 46.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 2.9e-71 273.1 291 44.0
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 7.2e-70 268.5 381 40.7
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.1e-69 266.9 289 44.6
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-66 257.7 198 64.1
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 6.9e-65 251.9 266 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.3e-63 247.7 259 45.9
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 6.1e-61 238.8 161 70.2
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-60 238.0 200 61.5
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 4.7e-53 212.6 241 48.5
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.4e-49 201.1 196 52.0
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 5.4e-41 172.6 279 35.5
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 4.1e-33 146.4 84 81.0
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.6e-32 144.4 123 56.9
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 7.7e-32 142.1 114 62.3
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 4.4e-27 126.3 106 60.4
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 4.4e-27 126.3 106 60.4
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.7e-27 125.9 96 62.5
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-24 117.9 73 75.3
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.0e-23 112.8 68 77.9
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.9e-22 110.9 143 44.1
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 5.6e-22 109.4 131 49.6
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 7.3e-22 109.0 70 74.3
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.3e-20 104.0 87 57.5
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.9e-20 102.1 145 44.8
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.6e-19 100.5 176 36.4
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 5.0e-15 86.3 58 74.1
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 8.6e-15 85.5 120 42.5
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-14 84.3 52 75.0
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 3.4e-11 73.6 47 70.2
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.3e-10 68.9 64 56.2
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 5.4e-09 66.2 95 44.2
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 4.6e-08 63.2 51 58.8


User provided reference genes

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